RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 A0A0A6YYD5 115 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 A0A1W2PQ09 198 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 ZNF670-ZNF695F2Z2N8 137 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SLC9A3R1O14745 358 aaPredicted RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 HOXC11O43248 304 aaPredicted RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 ERI3O43414 337 aaKnown RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 SNX4O95219 450 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SLC35G4P0C7Q5 338 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SDC2P34741 201 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 DRD3P35462 400 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MAN2A2P49641 1150 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SLAMF1Q13291 335 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 PIP5KL1Q5T9C9 394 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 ZNF765Q7L2R6 523 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 LHFPL3Q86UP9 236 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 CAMKK1Q8N5S9 505 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SCAIQ8N9R8 606 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SUN3Q8TAQ9 357 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 BBS4Q96RK4 519 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MIXL1Q9H2W2 232 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 POLMQ9NP87 494 aaPredicted RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 STUB1Q9UNE7 303 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 CPSF4LA6NMK7 179 aaKnown RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 MID1O15344 667 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 COQ9O75208 318 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 LALBAP00709 142 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 RORCP51449 518 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 LARS2Q15031 903 aaKnown RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 ARHGEF6Q15052 776 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 C6orf183Q5T699 404 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PRICKLE2Q7Z3G6 844 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 FBXL6Q8N531 539 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 C1GALT1C1Q96EU7 318 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 NELL2Q99435 816 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 CTRCQ99895 268 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 DDX31Q9H8H2 851 aaKnown RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 NEK6Q9HC98 313 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 KLHL3Q9UH77 587 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 A0A1W2PQL4 384 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 A0A1W2PRQ8 180 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 HYKKA2RU49 373 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 DVL2O14641 736 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 FCMRO60667 390 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 APOA1P02647 267 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 CSF2P04141 144 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 CERS1P27544 350 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 HTR3AP46098 478 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 GAS1P54826 345 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PRMT2P55345 433 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 DEFA1P59665 94 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 DEFA3P59666 94 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PSPHP78330 225 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 FGL2Q14314 439 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 LTB4RQ15722 352 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 AGAP6Q5VW22 663 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 SLC30A8Q8IWU4 369 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 REM2Q8IYK8 340 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 PROKR2Q8NFJ6 384 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 NLGN4YQ8NFZ3 816 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 KAT2AQ92830 837 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 AGAP4Q96P64 663 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 BEX2Q9BXY8 128 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 SPHK1Q9NYA1 384 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 MALT1Q9UDY8 824 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 TESQ9UGI8 421 aaKnown RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 CHST2Q9Y4C5 530 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 A0A075B6Q4 140 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 MAN2B1O00754 1011 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PDE9AO76083 593 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 IL7P13232 177 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 TRHRP34981 398 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 CLDN2P57739 230 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 CHRNEQ04844 493 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 HYAL2Q12891 473 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 TMEM52BQ4KMG9 183 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 ARMC4Q5T2S8 1044 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 SUSD6Q92537 303 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PIK3R3Q92569 461 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 FGF11Q92914 225 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 FAM46AQ96IP4 442 aaKnown RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 PELI2Q9HAT8 420 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 CRNNQ9UBG3 495 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 SEC14L4Q9UDX3 406 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 PLEKHB1Q9UF11 243 aaPredicted RBP12.13□□□□□ -0.47
LDLR-207ENST00000558013 SSR3Q9UNL2 185 aa12.13□□□□□ -0.47
LDLR-207ENST00000558013 NCR1O76036 304 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 AVPR1BP47901 424 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 BCL2A1Q16548 175 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 SLC30A6Q6NXT4 461 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 ADGRD2Q7Z7M1 963 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 GLCCI1Q86VQ1 547 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 FAM26EQ8N5C1 309 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 OR6F1Q8NGZ6 308 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 WFIKKN2Q8TEU8 576 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 ZNF486Q96H40 463 aaPredicted RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 PPP1R16AQ96I34 528 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 SAP130Q9H0E3 1048 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 WBP11Q9Y2W2 641 aaKnown RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 N6AMT1Q9Y5N5 214 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 CEP290O15078 2479 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms