RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MRPL28Q13084 256 aaKnown RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 MAB21L1Q13394 359 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR4D1Q15615 310 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TATDN3Q17R31 274 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ANKS6Q68DC2 871 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR2T5Q6IEZ7 315 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ARSKQ6UWY0 536 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CERS6Q6ZMG9 384 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR8H3Q8N146 312 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 FBXO39Q8N4B4 442 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ATG16L2Q8NAA4 619 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR2T29Q8NH02 315 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 RHEBL1Q8TAI7 183 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GPBAR1Q8TDU6 330 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DACT3Q96B18 629 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CRELD1Q96HD1 420 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 HYLS1Q96M11 299 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF578Q96N58 590 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DCLRE1CQ96SD1 692 aaKnown RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 AARSD1Q9BTE6 412 aaKnown RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PPA2Q9H2U2 334 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DPEP2Q9H4A9 486 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PLCXD1Q9NUJ7 323 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PDP1Q9P0J1 537 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 NFKBIL1Q9UBC1 381 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GPR34Q9UPC5 381 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ALG5Q9Y673 324 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 KIF26BQ2KJY2 2108 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SLC35F4A4IF30 521 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 IQCF5A8MTL0 148 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SUPT3HB4E1H0 165 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 NDUFA2O43678 99 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 RFPL3O75679 317 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PTHP01270 115 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PKMP14618 531 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF7P17097 686 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 FPR1P21462 350 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 RPS3P23396 243 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 CHMP24386 653 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ACRV1P26436 265 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 DNAJA1P31689 397 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 MAGEA2P43356 314 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 KIR2DL3P43628 341 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PER3P56645 1201 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SHC2P98077 582 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TEKQ02763 1124 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 RUNX1T1Q06455 604 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 NPRL3Q12980 569 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 GPR33Q49SQ1 333 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PDZK1Q5T2W1 519 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 CACHD1Q5VU97 1274 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 MLIPQ5VWP3 458 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 LYPLAL1Q5VWZ2 237 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SHEQ5VZ18 495 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ZDHHC20Q5W0Z9 365 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TYW3Q6IPR3 259 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 METTL2BQ6P1Q9 378 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PLET1Q6UQ28 207 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 FAM131AQ6UXB0 335 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF367Q7RTV3 350 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 PRSS42Q7Z5A4 293 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 COMMD7Q86VX2 200 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 GKN2Q86XP6 184 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF547Q8IVP9 402 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 LAX1Q8IWV1 398 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 STX19Q8N4C7 294 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 DNAJC22Q8N4W6 341 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 CLDN19Q8N6F1 224 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ANKRD53Q8N9V6 530 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 IFI44Q8TCB0 444 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SLC13A3Q8WWT9 602 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 GGHQ92820 318 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TESCQ96BS2 214 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TRMT61AQ96FX7 289 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 WDFY2Q96P53 400 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ATOH8Q96SQ7 321 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TFB2MQ9H5Q4 396 aaKnown RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TRIM45Q9H8W5 580 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TAS2R13Q9NYV9 303 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TAAR2Q9P1P5 351 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 GALPQ9UBC7 116 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 SLC23A2Q9UGH3 650 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 IKZF3Q9UKT9 509 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 ELF5Q9UKW6 265 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-216ENST00000552909 MAPRE3Q9UPY8 281 aa7.24□□□□□ -1.25
LIMA1-216ENST00000552909 TRBV23OR9-2A0A075B6M9 112 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 FAM220BPB1ANY3 271 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 B4DGG1 531 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SMLR1H3BR10 107 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 KCNJ13O60928 360 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 NIPSNAP2O75323 286 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MLYCDO95822 493 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 STSP08842 583 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 G6PDP11413 515 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 FDXRP22570 491 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PRDX3P30048 256 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 AKT1P31749 480 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ACTR1BP42025 376 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CBX5P45973 191 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 RORCP51449 518 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms