RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OR4Q3Q8NH05 313 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 LHX4Q969G2 390 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 NCLNQ969V3 563 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 ZNF689Q96CS4 500 aaPredicted RBP3.34□□□□□ -1.87
VPS29-205ENST00000548539 ATF6BQ99941 703 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 RAB11FIP5Q9BXF6 653 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 TUBB1Q9H4B7 451 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 JPT2Q9H910 190 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 ELL3Q9HB65 397 aaPredicted RBP3.34□□□□□ -1.87
VPS29-205ENST00000548539 POLE3Q9NRF9 147 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 STARD5Q9NSY2 213 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 ZNF446Q9NWS9 450 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 EMCNQ9ULC0 261 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 ZNF490Q9ULM2 529 aaPredicted RBP3.34□□□□□ -1.87
VPS29-205ENST00000548539 MGAT4BQ9UQ53 548 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 MOB4Q9Y3A3 225 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 SMAD5-AS1Q9Y6J3 95 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 AP1M2Q9Y6Q5 423 aa3.34□□□□□ -1.87
VPS29-205ENST00000548539 A0A0U1RQV5 110 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 A0A1B0GTH9 108 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 A0A1B0GU03 582 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ANKRD30BLA7E2S9 258 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 RNF212BA8MTL3 300 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 E9PQ18 207 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 PDXKO00764 312 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 VPS26AO75436 327 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 TOM1L1O75674 476 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 APBB3O95704 486 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 SEMA4FO95754 770 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 HEXBP07686 556 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 HCKP08631 526 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 HSD17B1P14061 328 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 PTPN6P29350 595 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 SPRP35270 261 aaPredicted RBP3.33□□□□□ -1.88
VPS29-205ENST00000548539 MS4A2Q01362 244 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 HSF2Q03933 536 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 PAX8Q06710 450 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 KLHL30Q0D2K2 578 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 FCHO2Q0JRZ9 810 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ZSWIM7Q19AV6 140 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 SHROOM1Q2M3G4 852 aaPredicted RBP3.33□□□□□ -1.88
VPS29-205ENST00000548539 PARP6Q2NL67 630 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 TMEM44Q2T9K0 475 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ACER2Q5QJU3 275 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ZNF343Q6P1L6 599 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 PNCKQ6P2M8 343 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 EMBQ6PCB8 327 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 PAQR6Q6TCH4 344 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 APOOLQ6UXV4 268 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 GPRIN3Q6ZVF9 776 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 MOB2Q70IA6 237 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 TIPARPQ7Z3E1 657 aaKnown RBP3.33□□□□□ -1.88
VPS29-205ENST00000548539 SUMF1Q8NBK3 374 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 OR52J3Q8NH60 311 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 CPXM1Q96SM3 734 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ST6GALNAC5Q9BVH7 336 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 GPR174Q9BXC1 333 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 TRIM15Q9C019 465 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ADNPQ9H2P0 1102 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 COQ10BQ9H8M1 238 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 ECT2Q9H8V3 914 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 GTSE1Q9NYZ3 720 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 SH3BGRL2Q9UJC5 107 aa3.33□□□□□ -1.88
VPS29-205ENST00000548539 IGKV3D-15A0A087WSY6 115 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SHISA9B4DS77 424 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 H0YL77 283 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 CHADO15335 359 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SDC3O75056 442 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ECDO95905 644 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 GOT2P00505 430 aaKnown RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 ANXA4P09525 319 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 GSTT2P0CG29 244 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 GSTT2BP0CG30 244 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 LMO2P25791 158 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SAA4P35542 130 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 HTR5AP47898 357 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 VCPP55072 806 aaKnown RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 HSD17B7P56937 341 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 HAND2P61296 217 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 HERVK_113P63132 956 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ERVK-8P63133 956 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SCGB2A2Q13296 93 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 CCL14Q16627 93 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ANKRD55Q3KP44 614 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ACSF3Q4G176 576 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 BEND6Q5SZJ8 279 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 C9orf66Q5T8R8 295 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SEL1L2Q5TEA6 688 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 FAM219BQ5XKK7 198 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ZNF772Q68DY9 489 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 AFTPHQ6ULP2 937 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ARSKQ6UWY0 536 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 RANBP3LQ86VV4 465 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 Q8N377 158 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 TSPAN18Q96SJ8 248 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ERVK-6Q9BXR3 956 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 GFRA4Q9GZZ7 299 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 KAT8Q9H7Z6 458 aaKnown RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 HEXA-AS1Q9H8Q6 139 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 ESM1Q9NQ30 184 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms