RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZCCHC2Q9C0B9 1178 aaKnown RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 AHSPQ9NZD4 102 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CSNK1G3Q9Y6M4 447 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 DSPPQ9NZW4 1301 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 IGKV1-8A0A0C4DH67 115 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 ABHD14A-ACY1A0A1B0GW23 586 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 SH3D21A4FU49 640 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CD8B2A6NJW9 211 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CD8BP10966 210 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CHRNEQ04844 493 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CXorf40AQ8TE69 158 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 RNFT2Q96EX2 444 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 GFM1Q96RP9 751 aaKnown RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 ZNF607Q96SK3 696 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 MND1Q9BWT6 205 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 SLC6A17Q9H1V8 727 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CNOT2Q9NZN8 540 aaKnown RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 RPL36Q9Y3U8 105 aaKnown RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 A0A087WUU8 490 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 MEIOCA2RUB1 952 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 KELP23276 732 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PPM1AP35813 382 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 ATP6V1E1P36543 226 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 P2RY2P41231 377 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 RFX3P48380 749 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 STXBP1P61764 594 aaKnown RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 SLC35F1Q5T1Q4 408 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 MFSD4BQ5TF39 518 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 ZNF513Q8N8E2 541 aaPredicted RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 MRPL43Q8N983 215 aaKnown RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 C9orf43Q8TAL5 461 aaPredicted RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 CHAC2Q8WUX2 184 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 ZBED6CLQ96FA7 236 aaPredicted RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 METTL2AQ96IZ6 378 aaKnown RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 AMDHD1Q96NU7 426 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 NDEL1Q9GZM8 345 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 MED20Q9H944 212 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CRNNQ9UBG3 495 aaPredicted RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 HCN2Q9UL51 889 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CLEC4AQ9UMR7 237 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 STUB1Q9UNE7 303 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PRNPP04156 253 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CLTBP09497 229 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CELP19835 753 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CERS1P27544 350 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CCR8P51685 355 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PCBP4P57723 403 aaKnown RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 TAS2R41P59536 307 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PSPHP78330 225 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 FUT5Q11128 374 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 C1DQ13901 141 aaKnown RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 PDZK1Q5T2W1 519 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 FCRLBQ6BAA4 426 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 NKAIN4Q8IVV8 208 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PAK6Q9NQU5 681 aaPredicted RBP14.17□□□□□ -0.14
USP28-214ENST00000545540 MGAT4BQ9UQ53 548 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 CMAHPQ9Y471 501 aa14.17□□□□□ -0.14
USP28-214ENST00000545540 PIP5K1CO60331 668 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 TRHRP34981 398 aaPredicted RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 MC3RP41968 323 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 IL12RB1P42701 662 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 FABP5Q01469 135 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 WSCD2Q2TBF2 565 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 ZFP69Q49AA0 526 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 C19orf48Q6RUI8 117 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 IL20RBQ6UXL0 311 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 RD3Q7Z3Z2 195 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 UBQLNLQ8IYU4 475 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 TBC1D19Q8N5T2 526 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 OR8D1Q8WZ84 308 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 WDR34Q96EX3 536 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 CNRIP1Q96F85 164 aaPredicted RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 SAP130Q9H0E3 1048 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 ANKHQ9HCJ1 492 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 A0A1W2PPV9 198 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 SHISA3A0PJX4 238 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 ZNF670-ZNF695F2Z2N8 137 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 FAAHO00519 579 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 HPGDSO60760 199 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 LINC00271P0C7V0 271 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 GNSP15586 552 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 RPL3P39023 403 aaKnown RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 C6orf132Q5T0Z8 1188 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 CCNJQ5T5M9 372 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 FAM46CQ5VWP2 391 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 LAPTM4BQ86VI4 370 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 NUDT13Q86X67 352 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 DCUN1D3Q8IWE4 304 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 OR9A2Q8NGT5 310 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 PIK3R3Q92569 461 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 HHIPL1Q96JK4 782 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 INSM2Q96T92 566 aaPredicted RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 PLEKHB1Q9UF11 243 aaPredicted RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 MTCL1Q9Y4B5 1905 aaKnown RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 A0A1W2PR48 441 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 CASKO14936 926 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 DNAJB6O75190 326 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 CSF3P09919 207 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 SLC35G4P0C7Q5 338 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 MYL12AP19105 171 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms