RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 WIF1Q9Y5W5 379 aa11.65□□□□□ -0.54
USP28-212ENST00000544750 NBEAL1Q6ZS30 2694 aa11.65□□□□□ -0.54
USP28-212ENST00000544750 A0A1W2PR48 441 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 MSTNO14793 375 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 SNPHO15079 494 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 HCRTR2O43614 444 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 SOX30O94993 753 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 ABCB1P08183 1280 aaPredicted RBP11.64□□□□□ -0.55
USP28-212ENST00000544750 SLC35E2BP0CK96 405 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 SLC35E2P0CK97 266 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 CD1DP15813 335 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 STMN1P16949 149 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 SPRP35270 261 aaPredicted RBP11.64□□□□□ -0.55
USP28-212ENST00000544750 PTH2RP49190 550 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 ARFIP1P53367 373 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 DIO3P55073 304 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 GFRA1P56159 465 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 EEF1A1P68104 462 aaKnown RBP11.64□□□□□ -0.55
USP28-212ENST00000544750 DLG1Q12959 904 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 GAB1Q13480 694 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 TOMM20Q15388 145 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 EEF1A1P5Q5VTE0 462 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 DESI1Q6ICB0 168 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 MED27Q6P2C8 311 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 C20orf204Q6ZNR8 217 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 GPSM1Q86YR5 675 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 SPATA6LQ8N4H0 392 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 HGDQ93099 445 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 UBE2E3Q969T4 207 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 RGMAQ96B86 450 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 STARD4Q96DR4 205 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 PIK3IP1Q96FE7 263 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 UBXN10Q96LJ8 280 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 HS3ST6Q96QI5 342 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 UBTD1Q9HAC8 227 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 TXNDC16Q9P2K2 825 aa11.64□□□□□ -0.55
USP28-212ENST00000544750 YLPM1P49750 1951 aaKnown RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 A0A0A6YYD5 115 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 A0A1W2PNV4 684 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TMPRSS11DO60235 418 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 OR10H2O60403 315 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CDH16O75309 829 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TGM6O95932 706 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 RHOXF2BP0C7M4 288 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CCDC166P0CW27 439 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 PCNAP12004 261 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 S1PR1P21453 382 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CHMP24386 653 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 ABCD3P28288 659 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 SERPINB1P30740 379 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TLX1P31314 330 aaPredicted RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 BSGP35613 385 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CD79BP40259 229 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 BUD31P41223 144 aaPredicted RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 LHX2P50458 406 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 SLC12A2P55011 1212 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CLDN18P56856 261 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 RAB10P61026 200 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 RPP38P78345 283 aaKnown RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 SETDB1Q15047 1291 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 ZNF474Q6S9Z5 364 aaPredicted RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 ANGPTL8Q6UXH0 198 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 C22orf34Q6ZV56 151 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 LRRC70Q7Z2Q7 622 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TRIM42Q8IWZ5 723 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 PHC2Q8IXK0 858 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 PRR22Q8IZ63 422 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 WDSUB1Q8N9V3 476 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 HUS1BQ8NHY5 278 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TSPAN17Q96FV3 270 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 NODALQ96S42 347 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 RHOXF2Q9BQY4 288 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 PIGQQ9BRB3 760 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 CD244Q9BZW8 370 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 OR10A5Q9H207 317 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 KLHL28Q9NXS3 571 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 NFU1Q9UMS0 254 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 EXO1Q9UQ84 846 aaKnown RBP11.63□□□□□ -0.55
USP28-212ENST00000544750 DTX4Q9Y2E6 619 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 TSC22D4Q9Y3Q8 395 aa11.63□□□□□ -0.55
USP28-212ENST00000544750 GLOD5A6NK44 160 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 H0Y3Z8 333 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 PLOD2O00469 737 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 CCNT2O60583 730 aaKnown RBP11.62□□□□□ -0.55
USP28-212ENST00000544750 ICOSLGO75144 302 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 EEDO75530 441 aaKnown RBP11.62□□□□□ -0.55
USP28-212ENST00000544750 PPM1BO75688 479 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 AIFM1O95831 613 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 CRHP06850 196 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 NAGAP17050 411 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 GPX3P22352 226 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 CPOXP36551 454 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 PIK3CBP42338 1070 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 STARP49675 285 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 NRG3P56975 720 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 SRYQ05066 204 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 SLMAPQ14BN4 828 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 GRHL2Q6ISB3 625 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 SLC30A6Q6NXT4 461 aa11.62□□□□□ -0.55
USP28-212ENST00000544750 VWA1Q6PCB0 445 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms