RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 C3orf30Q96M34 536 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 VSTM2LQ96N03 204 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 AMDHD1Q96NU7 426 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 BBS4Q96RK4 519 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 SECISBP2Q96T21 854 aaKnown RBP12.07□□□□□ -0.48
LTBR-208ENST00000541005 COL12A1Q99715 3063 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 ITPAQ9BY32 194 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 TSPAN10Q9H1Z9 355 aaPredicted RBP12.07□□□□□ -0.48
LTBR-208ENST00000541005 PCNX3Q9H6A9 2034 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 REEP4Q9H6H4 257 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 ZDHHC11Q9H8X9 412 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 PLSCR2Q9NRY7 297 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 BCAP29Q9UHQ4 241 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 CNOT11Q9UKZ1 510 aaKnown RBP12.07□□□□□ -0.48
LTBR-208ENST00000541005 NPIPA1Q9UND3 350 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 OSGIN2Q9Y236 505 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 ZNF835Q9Y2P0 537 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 RAP2CQ9Y3L5 183 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 NPFFR2Q9Y5X5 522 aa12.07□□□□□ -0.48
LTBR-208ENST00000541005 MED12Q93074 2177 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 A0A1B0GUH1 482 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 FRG2CA6NGY1 282 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ACOT7O00154 380 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 PLOD2O00469 737 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ASNA1O43681 348 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 SLC19A2O60779 497 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 SKAP2O75563 359 aaPredicted RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 PSMG1O95456 288 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 RNF224P0DH78 156 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 BGNP21810 368 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 DRD5P21918 477 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ABCD3P28288 659 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 FRKP42685 505 aaPredicted RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 CA7P43166 264 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 PPICP45877 212 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 SLC1A6P48664 564 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 NCBP2P52298 156 aaKnown RBP eCLIP12.06□□□□□ -0.48
LTBR-208ENST00000541005 MAGOHP61326 146 aaKnown RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 SRSF11Q05519 484 aaKnown RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 RBPJQ06330 500 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 SMU1Q2TAY7 513 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 CMPK2Q5EBM0 449 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 TBCELQ5QJ74 424 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 C6orf136Q5SQH8 315 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 AGBL2Q5U5Z8 902 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 HHATQ5VTY9 493 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 TMEM81Q6P7N7 255 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 GHDCQ8N2G8 530 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ZNF781Q8N8C0 355 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 OR7G2Q8NG99 324 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 KAT2AQ92830 837 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 NTNG2Q96CW9 530 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 TSSK3Q96PN8 268 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 PSMG3-AS1Q96PY0 264 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 TTTY12Q9BZ98 90 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 C20orf27Q9GZN8 174 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ZNF395Q9H8N7 513 aaPredicted RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 IL1RL2Q9HB29 575 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 PROK2Q9HC23 129 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 ASIC5Q9NY37 505 aa12.06□□□□□ -0.48
LTBR-208ENST00000541005 GPR55Q9Y2T6 319 aaPredicted RBP12.06□□□□□ -0.48
LTBR-208ENST00000541005 ATP6AP2A0A1C7CYW4 349 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 TP53I11O14683 189 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 PDPK1O15530 556 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 COQ9O75208 318 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 PPM1BO75688 479 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 ATP6AP2O75787 350 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 JUNP05412 331 aaKnown RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 ABCB1P08183 1280 aaPredicted RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 CT45A8P0DMV1 189 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 CT45A9P0DMV2 189 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 H2AFXP16104 143 aaPredicted RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 DDX5P17844 614 aaKnown RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 HPCAL1P37235 193 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 RFC3P40938 356 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 MC3RP41968 323 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 DNASE1L1P49184 302 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 RPL14P50914 215 aaKnown RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 FBXW4P57775 412 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 C21orf58P58505 322 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 BST1Q10588 318 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 CT45A2Q5DJT8 189 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 TMEM64Q6YI46 380 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 FAM47EQ6ZV65 393 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 R3HCC1LQ7Z5L2 792 aaKnown RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 SLC22A16Q86VW1 577 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 LRRC34Q8IZ02 419 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 OR2L13Q8N349 312 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 FAM109AQ8N4B1 249 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 ANKRD42Q8N9B4 389 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 FAM13CQ8NE31 585 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 RAB3IL1Q8TBN0 382 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 SPPL2AQ8TCT8 520 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 ZBTB9Q96C00 473 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 PPCDCQ96CD2 204 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 MAGED4Q96JG8 741 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 GLIPR2Q9H4G4 154 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 ANKRA2Q9H9E1 313 aa12.05□□□□□ -0.48
LTBR-208ENST00000541005 ACSS1Q9NUB1 689 aaPredicted RBP12.05□□□□□ -0.48
LTBR-208ENST00000541005 TUBA8Q9NY65 449 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms