RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EXD2Q9NVH0 621 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 C14orf105Q9NVL8 296 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 MKL2Q9ULH7 1088 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 LIPT1Q9Y234 373 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 KCNE3Q9Y6H6 103 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 PRAMEF27A3QJZ7 478 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 SYNDIG1LA6NDD5 238 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 MEN1O00255 615 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 CASQ2O14958 399 aaPredicted RBP19.62■□□□□ 0.73
VPS28-208ENST00000527797 NME6O75414 186 aaPredicted RBP19.62■□□□□ 0.73
VPS28-208ENST00000527797 CBX7O95931 251 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 MT-CO3P00414 261 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 S1PR1P21453 382 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 VHLP40337 213 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 CRYBA2P53672 197 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 CRISP3P54108 245 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 NKG7Q16617 165 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 FKBP9P1Q75LS8 142 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 OVCH1Q7RTY7 1134 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 ANKFN1Q8N957 763 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 SLC16A11Q8NCK7 471 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 OR10Q1Q8NGQ4 319 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 TSLPQ969D9 159 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 VN1R1Q9GZP7 353 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 PNO1Q9NRX1 252 aaKnown RBP19.62■□□□□ 0.73
VPS28-208ENST00000527797 TOR4AQ9NXH8 423 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 DYRK3O43781 588 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 ALOX5P09917 674 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 ZGLP1P0C6A0 271 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 PGDP52209 483 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 SELENOWP63302 87 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 NSDHLQ15738 373 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 RPS26P11Q5JNZ5 115 aaPredicted RBP19.61■□□□□ 0.73
VPS28-208ENST00000527797 WDR53Q7Z5U6 358 aaPredicted RBP19.61■□□□□ 0.73
VPS28-208ENST00000527797 AMIGO2Q86SJ2 522 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 GLRX5Q86SX6 157 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 LAPTM4BQ86VI4 370 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 TMEM151BQ8IW70 566 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 PLPP5Q8NEB5 264 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 BBS10Q8TAM1 723 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 LZICQ8WZA0 190 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 TAMM41Q96BW9 452 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 TPD52L3Q96J77 140 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 HSH2DQ96JZ2 352 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 ZNF607Q96SK3 696 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 DOHHQ9BU89 302 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 CNPPD1Q9BV87 410 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 SEMA6AQ9H2E6 1030 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 VCX3BQ9H321 246 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 PIGUQ9H490 435 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 AGPAT4Q9NRZ5 378 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 GIN1Q9NXP7 522 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 CALML5Q9NZT1 146 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 IFT80Q9P2H3 777 aaPredicted RBP19.61■□□□□ 0.73
VPS28-208ENST00000527797 PCDHGB3Q9Y5G1 929 aa19.61■□□□□ 0.73
VPS28-208ENST00000527797 TCRBV16S1A1N1A0A5B0 115 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 C17orf105B2RV13 164 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 CSO75390 466 aaKnown RBP19.6■□□□□ 0.73
VPS28-208ENST00000527797 RECKO95980 971 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 MT-ND1P03886 318 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 OPN1SWP03999 348 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 KLK3P07288 261 aaPredicted RBP19.6■□□□□ 0.73
VPS28-208ENST00000527797 ACP2P11117 423 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 CDK4P11802 303 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 RAB15P59190 212 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 FUT7Q11130 342 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 GPAT3Q53EU6 434 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 EXOSC6Q5RKV6 272 aaKnown RBP19.6■□□□□ 0.73
VPS28-208ENST00000527797 PRAMEF8Q5VWM4 474 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 PRAMEF7Q5VXH5 474 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 LPCAT4Q643R3 524 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 HMBOX1Q6NT76 420 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 RAB11FIP2Q7L804 512 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 C16orf62Q7Z3J2 963 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 LRFN5Q96NI6 719 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 TREX2Q9BQ50 279 aaPredicted RBP19.6■□□□□ 0.73
VPS28-208ENST00000527797 BCL2L10Q9HD36 194 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 PCDHGA8Q9Y5G5 932 aa19.6■□□□□ 0.73
VPS28-208ENST00000527797 ASCC3Q8N3C0 2202 aaKnown RBP19.6■□□□□ 0.73
VPS28-208ENST00000527797 SOX30O94993 753 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 ZNF28P17035 718 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 ITIH1P19827 911 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 FUT5Q11128 374 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 ZNF155Q12901 538 aaPredicted RBP19.59■□□□□ 0.73
VPS28-208ENST00000527797 DUSP5Q16690 384 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 DCAF12Q5T6F0 453 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 VTCN1Q7Z7D3 282 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 KRT73Q86Y46 540 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 PTPMT1Q8WUK0 201 aaPredicted RBP19.59■□□□□ 0.73
VPS28-208ENST00000527797 CDS1Q92903 461 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 LIN37Q96GY3 246 aaPredicted RBP19.59■□□□□ 0.73
VPS28-208ENST00000527797 TRNT1Q96Q11 434 aaKnown RBP19.59■□□□□ 0.73
VPS28-208ENST00000527797 DEPDC7Q96QD5 511 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 STACQ99469 402 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 ULBP3Q9BZM4 244 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 DUSP22Q9NRW4 184 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 ERVK-19Q9WJR5 959 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 WDFY4Q6ZS81 3184 aa19.59■□□□□ 0.73
VPS28-208ENST00000527797 A0A0G2JPF8 293 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 FAM149AA5PLN7 773 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms