RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PTP4A1Q93096 173 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 RAB7BQ96AH8 199 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 RAD51AP1Q96B01 352 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 PYCR2Q96C36 320 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ZNF274Q96GC6 653 aaPredicted RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 MSANTD3Q96H12 275 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 CEP170P1Q96L14 293 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 IFT74Q96LB3 600 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ZNF597Q96LX8 424 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 CFAP57Q96MR6 1250 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 TXN2Q99757 166 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 SIKE1Q9BRV8 207 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 RPP25Q9BUL9 199 aaKnown RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 ACAT2Q9BWD1 397 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 FRMD8P1Q9BZ68 369 aaPredicted RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 RIMS4Q9H426 269 aaPredicted RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 SYNDIG1Q9H7V2 258 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 HEXA-AS1Q9H8Q6 139 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 SPACA1Q9HBV2 294 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 MRPL40Q9NQ50 206 aaKnown RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 GDAP2Q9NXN4 497 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 KCNN3Q9UGI6 736 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 POLLQ9UGP5 575 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ENOPH1Q9UHY7 261 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 PILRBQ9UKJ0 227 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 PSME2Q9UL46 239 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.16□□□□□ -1.9
CD44-217ENST00000525348 STYXL1Q9Y6J8 313 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 C9orf84Q5VXU9 1444 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 FER1L5A0AVI2 2057 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 PHLPP2Q6ZVD8 1323 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ATP10AO60312 1499 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ATP10BO94823 1461 aa3.16□□□□□ -1.9
CD44-217ENST00000525348 ABCA6Q8N139 1617 aa3.15□□□□□ -1.9
CD44-217ENST00000525348 RNF17Q9BXT8 1623 aaKnown RBP3.15□□□□□ -1.9
CD44-217ENST00000525348 MTUS2Q5JR59 1369 aa3.15□□□□□ -1.9
CD44-217ENST00000525348 LRRC7Q96NW7 1537 aa3.15□□□□□ -1.9
CD44-217ENST00000525348 IGLV4-3A0A075B6K6 122 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 A0A087WZ39 114 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 A0A1B0GTQ1 180 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CTAGE15A4D2H0 777 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 KRT87PA6NCN2 255 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ERVV-1B6SEH8 477 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SLC1A7O00341 560 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SLC9A3R1O14745 358 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 PRPSAP2O60256 369 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CIAO1O76071 339 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SLU7O95391 586 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 QDPRP09417 244 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CLTAP09496 248 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 AOC1P19801 751 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CYP3A5P20815 502 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CTNNA2P26232 953 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 IFNA8P32881 189 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 RFC2P35250 354 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 LONP1P36776 959 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 ACADVLP49748 655 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 MFAP3P55082 362 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ADARP55265 1226 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 PEX3P56589 373 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 STARD6P59095 220 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 EIF3EP60228 445 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 TSPAN5P62079 268 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 HTD2P86397 168 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 MZT1Q08AG7 82 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ASPHQ12797 758 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 PLD1Q13393 1074 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 GIT2Q14161 759 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 WDR43Q15061 677 aaKnown RBP eCLIP3.15□□□□□ -1.91
CD44-217ENST00000525348 KLHL40Q2TBA0 621 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 C12orf60Q5U649 245 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CST9LP1Q5W188 147 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CENPPQ6IPU0 288 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 KRTAP5-4Q6L8H1 288 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 PIGWQ7Z7B1 504 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CTAGE6Q86UF2 777 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 LRRC6Q86X45 466 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 PLA2G4DQ86XP0 818 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CCDC60Q8IWA6 550 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 APCDD1Q8J025 514 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 LINC00518Q8N0U6 118 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 OR8H3Q8N146 312 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SLC39A11Q8N1S5 342 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 C10orf53Q8N6V4 93 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 DNAAF3Q8N9W5 541 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 Q8NFD4 153 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 OR4D10Q8NGI6 311 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 OR4C15Q8NGM1 316 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 RAB3IL1Q8TBN0 382 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SLC26A7Q8TE54 656 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ADAMTS16Q8TE57 1224 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SSC4DQ8WTU2 575 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 KRT35Q92764 455 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 EXT2Q93063 718 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 EFHD2Q96C19 240 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 ANKRD36BP1Q96IX9 119 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ATP6V0BQ99437 205 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 TBCDQ9BTW9 1192 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 NUP58Q9BVL2 599 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 FUT8Q9BYC5 575 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms