RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 OR4F21O95013 312 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 CBX7O95931 251 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 SBK3P0C264 359 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 NAGAP17050 411 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 TACR1P25103 407 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 CNTFP26441 200 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 SOX18P35713 384 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 PTGDSP41222 190 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 ALDH9A1P49189 494 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 AGFG1P52594 562 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 NAGLUP54802 743 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 PLCXD2Q0VAA5 305 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 MAP4K2Q12851 820 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 SF3B4Q15427 424 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 TCHHL1Q5QJ38 904 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 FAM180BQ6P0A1 224 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 TMEM81Q6P7N7 255 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 NUP54Q7Z3B4 507 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 YRDCQ86U90 279 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 C1orf52Q8N6N3 182 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 FAM83FQ8NEG4 500 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 OR52R1Q8NGF1 315 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 FAM222BQ8WU58 562 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 DCAKDQ8WVC6 231 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 ABTB1Q969K4 478 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 TM4SF18Q96CE8 201 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 CNRIP1Q96F85 164 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 RMND5BQ96G75 393 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 LCORQ96JN0 433 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 FOXC2Q99958 501 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 MRPL57Q9BQC6 102 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 FAIM2Q9BWQ8 316 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 CXXC4Q9H2H0 198 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 EPB41L4BQ9H329 900 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 BRF2Q9HAW0 419 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 GALNT9Q9HCQ5 603 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 EHD3Q9NZN3 535 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 KLRF1Q9NZS2 232 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 ZNF629Q9UEG4 869 aaPredicted RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 TRPS1Q9UHF7 1281 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 ZNF639Q9UID6 485 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 CBLCQ9ULV8 474 aa10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 PRRC2AP48634 2157 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 ANKHD1Q8IWZ3 2542 aaKnown RBP10.53□□□□□ -0.72
HMGCS1-204ENST00000507293 AKAP6Q13023 2319 aa10.52□□□□□ -0.72
HMGCS1-204ENST00000507293 FAM221AA4D161 298 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 C2orf72A6NCS6 295 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MBD3L4A6NDZ8 208 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MBD3L3A6NE82 208 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PRAMEF25A6NGN4 478 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MBD3L5A6NJ08 208 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 CD8B2A6NJW9 211 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 EEF1E1-BLOC1S5C9J1V9 151 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ACOX3O15254 700 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 EEF1E1O43324 174 aaKnown RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 DIAPH2O60879 1101 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ICOSLGO75144 302 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 UGT2B11O75310 529 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 URI1O94763 535 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ESRRBO95718 433 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ACTL6AO96019 429 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 RHOXF2BP0C7M4 288 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PCSK2P16519 638 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MRPS35P82673 323 aaKnown RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 RCAN2Q14206 197 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 CEBPEQ15744 281 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 WHAMMP3Q1A5X7 153 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 TRMT12Q53H54 448 aaKnown RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 SLC30A6Q6NXT4 461 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 CDC20BQ86Y33 519 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 C9orf106Q8NAJ2 232 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 GOT1L1Q8NHS2 421 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MBD3L2Q8NHZ7 208 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 IFT81Q8WYA0 676 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 CTHRC1Q96CG8 243 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ZNF681Q96N22 645 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 FMO2Q99518 471 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 C1QTNF3Q9BXJ4 246 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 SERHLQ9NQF3 203 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PFDN4Q9NQP4 134 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 HEY2Q9UBP5 337 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PRODH2Q9UF12 536 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 DMGDHQ9UI17 866 aaKnown RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 FOXD3Q9UJU5 478 aaPredicted RBP10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ZNF180Q9UJW8 692 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ZNF225Q9UK10 706 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PSME2Q9UL46 239 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MAPRE3Q9UPY8 281 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 PLEKHA6Q9Y2H5 1048 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 ZNF780BQ9Y6R6 833 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MPDZO75970 2070 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 MED12LQ86YW9 2145 aa10.52□□□□□ -0.73
HMGCS1-204ENST00000507293 FRG2CA6NGY1 282 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 TUBAL3A6NHL2 446 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 MANBAO00462 879 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 TMIGD3P0DMS9 266 aaPredicted RBP10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 CYP4B1P13584 511 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 CD99P14209 185 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 CHN1P15882 459 aa10.51□□□□□ -0.73
HMGCS1-204ENST00000507293 DRD5P21918 477 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms