RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 PRODH2Q9UF12 536 aa11.03□□□□□ -0.64
PDLIM5-208ENST00000504489 COPG1Q9Y678 874 aaKnown RBP11.03□□□□□ -0.64
PDLIM5-208ENST00000504489 CHD6Q8TD26 2715 aa11.03□□□□□ -0.64
PDLIM5-208ENST00000504489 NCKAP5O14513 1909 aa11.03□□□□□ -0.64
PDLIM5-208ENST00000504489 SHANK1Q9Y566 2161 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 DYTNA2CJ06 578 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 FAM234BA2RU67 622 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 WWP2O00308 870 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 UPK1AO00322 258 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 COQ9O75208 318 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 ITGA10O75578 1167 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 PSMG1O95456 288 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 C6orf47O95873 294 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 WDPCPO95876 746 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 IL6P05231 212 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 PGRP06401 933 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 TRHRP34981 398 aaPredicted RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 ZFP36L2P47974 494 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 CDK9P50750 372 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 POLR2JP52435 117 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 DGKQP52824 942 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 SEC24CP53992 1094 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 DCAF7P61962 342 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 GNGT1P63211 74 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 LRRC74AQ0VAA2 488 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 SQLEQ14534 574 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 HLA-DQA1Q5Y7H0 255 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 BRICD5Q6PL45 260 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 TMEM64Q6YI46 380 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 RBMXL3Q8N7X1 1067 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 ZNF441Q8N8Z8 693 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 C10orf82Q8WW14 230 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 OR52E6Q96RD3 313 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 RASL10BQ96S79 203 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 RABEP2Q9H5N1 569 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 ZNF385DQ9H6B1 395 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 TRIM45Q9H8W5 580 aaPredicted RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 ANKRA2Q9H9E1 313 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 LIN28AQ9H9Z2 209 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 C3orf14Q9HBI5 128 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 NEUROD4Q9HD90 331 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 DDX18Q9NVP1 670 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 PCDHGB4Q9UN71 923 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 HEMK1Q9Y5R4 338 aaPredicted RBP11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 DNAJC13O75165 2243 aa11.02□□□□□ -0.65
PDLIM5-208ENST00000504489 OR5H15A6NDH6 313 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 TTC36A6NLP5 189 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 CFLARO15519 480 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 EMC8O43402 210 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 OR2J2O76002 312 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 NADKO95544 446 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 NCF2P19878 526 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 DRD4P21917 467 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 DRD5P21918 477 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 CD96P40200 585 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 PPICP45877 212 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 HLCSP50747 726 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 SSR4P51571 173 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 HBA1P69905 142 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 ARG2P78540 354 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 TUBA3CQ13748 450 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 TUBA3EQ6PEY2 450 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 PAOXQ6QHF9 649 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 C16orf47Q6ZP98 133 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 Q6ZS92 163 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 MSANTD1Q6ZTZ1 278 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 FUNDC1Q8IVP5 155 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 GPALPP1Q8IXQ4 340 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 CLECL1Q8IZS7 167 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 CPSF7Q8N684 471 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 OR9I1Q8NGQ6 314 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 GOT1L1Q8NHS2 421 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 SLC22A8Q8TCC7 542 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 SFXN5Q8TD22 340 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 MOAP1Q96BY2 351 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 MAGED4Q96JG8 741 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 LCORQ96JN0 433 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 VSTM2LQ96N03 204 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 CCDC115Q96NT0 180 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 BBC3Q96PG8 261 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 BTBD9Q96Q07 612 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 GAL3ST4Q96RP7 486 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 UTP23Q9BRU9 249 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 NSRP1Q9H0G5 558 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 FOLH1BQ9HBA9 442 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 MRGBPQ9NV56 204 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 PLA2G3Q9NZ20 509 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 BTNL2Q9UIR0 455 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 ERVK-11Q9UQG0 969 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 DTX4Q9Y2E6 619 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 GPR55Q9Y2T6 319 aaPredicted RBP11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 BSNQ9UPA5 3926 aa11.01□□□□□ -0.65
PDLIM5-208ENST00000504489 GIMAP1-GIMAP5A0A087WTJ2 511 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 C9JVG2 144 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 TO15178 435 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 ACOX3O15254 700 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 ZNF354AO60765 605 aaPredicted RBP11□□□□□ -0.65
PDLIM5-208ENST00000504489 CASRP41180 1078 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 CD97P48960 835 aa11□□□□□ -0.65
PDLIM5-208ENST00000504489 CCT3P49368 545 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms