RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 OTUB1Q96FW1 271 aaPredicted RBP11.03□□□□□ -0.64
CUX1-210ENST00000497815 C16orf58Q96GQ5 468 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 ZNF354BQ96LW1 612 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 MS4A4EQ96PG1 132 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 NPAS2Q99743 824 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 SLC35A5Q9BS91 424 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 CCDC106Q9BWC9 280 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 TRIM4Q9C037 500 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 MYLK2Q9H1R3 596 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 ZNF552Q9H707 407 aaPredicted RBP11.03□□□□□ -0.64
CUX1-210ENST00000497815 IL1RL2Q9HB29 575 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 FOLH1BQ9HBA9 442 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 ZBTB20Q9HC78 741 aaPredicted RBP11.03□□□□□ -0.64
CUX1-210ENST00000497815 SLC6A13Q9NSD5 602 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 STMN3Q9NZ72 180 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 PRODH2Q9UF12 536 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 TEKT2Q9UIF3 430 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 CFL2Q9Y281 166 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 NDUFAF1Q9Y375 327 aa11.03□□□□□ -0.64
CUX1-210ENST00000497815 TMEM200CA6NKL6 621 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ERN1O75460 977 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 ITGA10O75578 1167 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 CEACAM4O75871 244 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 C1QCP02747 245 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ALPPP05187 535 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 HMGN2P05204 90 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 UQCRC2P22695 453 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ADSLP30566 484 aaPredicted RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 SOX11P35716 441 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 NR0B1P51843 470 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 CORO7P57737 925 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 MLF1P58340 268 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 RPS26P62854 115 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 CBX1P83916 185 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 KCNAB2Q13303 367 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 CYLC2Q14093 348 aaPredicted RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 LASP1Q14847 261 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 MAPRE2Q15555 327 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 MEP1AQ16819 746 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 MMEL1Q495T6 779 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 GTDC1Q4AE62 458 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ISLR2Q6UXK2 745 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 TMEM64Q6YI46 380 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 C6orf120Q7Z4R8 191 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 RETREG3Q86VR2 466 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 TREML1Q86YW5 311 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 SLC44A2Q8IWA5 706 aaPredicted RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 BEST3Q8N1M1 668 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 TRIML2Q8N7C3 387 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ANKS4BQ8N8V4 417 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 OR56A1Q8NGH5 318 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 OR8K3Q8NH51 312 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 GOT1L1Q8NHS2 421 aaPredicted RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 NUBPLQ8TB37 319 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 PNPT1Q8TCS8 783 aaKnown RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 SFXN5Q8TD22 340 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 SLC9A6Q92581 669 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 MOAP1Q96BY2 351 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ABHD17AQ96GS6 310 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 LRRC37BQ96QE4 947 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 ANKRD10Q9NXR5 420 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 PLA2G3Q9NZ20 509 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 SLAMF8Q9P0V8 285 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 MYOTQ9UBF9 498 aa11.02□□□□□ -0.65
CUX1-210ENST00000497815 LEF1Q9UJU2 399 aaPredicted RBP11.02□□□□□ -0.65
CUX1-210ENST00000497815 CFAP47Q6ZTR5 3102 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 DYTNA2CJ06 578 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 K7EM74 188 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 FBP2O00757 339 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 SLC22A2O15244 555 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 KCNH1O95259 989 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 PSMG1O95456 288 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 PDGFAP04085 211 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 IFI6P09912 130 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 COX4I1P13073 169 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 TRPC1P48995 793 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 PRIM2P49643 509 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 RHDQ02161 417 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 MFAP5Q13361 173 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 ZNHIT3Q15649 155 aaPredicted RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 REP15Q6BDI9 236 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 MFSD12Q6NUT3 480 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 BHLHB9Q6PI77 547 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 PRR22Q8IZ63 422 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 TMEM156Q8N614 296 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 TTC9Q92623 222 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 ADIPOR1Q96A54 375 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 GIMAP5Q96F15 307 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 AURKBQ96GD4 344 aaPredicted RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 LCORQ96JN0 433 aaPredicted RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 SLC35G5Q96KT7 338 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 VSTM2LQ96N03 204 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 PAIP1Q9H074 479 aaKnown RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 NXF5Q9H1B4 397 aaKnown RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 EPS8L2Q9H6S3 715 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 ZNF71Q9NQZ8 489 aaPredicted RBP11.01□□□□□ -0.65
CUX1-210ENST00000497815 NTMQ9P121 344 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 ABI3Q9P2A4 366 aa11.01□□□□□ -0.65
CUX1-210ENST00000497815 FAF1Q9UNN5 650 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms