RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MADCAM1Q13477 382 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 KRT33BQ14525 404 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SF3B4Q15427 424 aaKnown RBP eCLIP16.9■□□□□ 0.39e-6■■□□□ 14.4
VIM-206ENST00000487938 C18orf63Q68DL7 685 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 KIAA1161Q6NSJ0 714 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 TMEM107Q6UX40 140 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SHFQ7M4L6 423 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 PRICKLE2Q7Z3G6 844 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SLC7A5P1Q8MH63 180 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 GATAD2BQ8WXI9 593 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SLC9A6Q92581 669 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 EFHD2Q96C19 240 aaPredicted RBP16.9■□□□□ 0.3
VIM-206ENST00000487938 CNRIP1Q96F85 164 aaPredicted RBP16.9■□□□□ 0.3
VIM-206ENST00000487938 EQTNQ9NQ60 294 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 MOSPD1Q9UJG1 213 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 DIMT1Q9UNQ2 313 aaKnown RBP16.9■□□□□ 0.3
VIM-206ENST00000487938 UNC80Q8N2C7 3258 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 OR52A4PA6NMU1 304 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 AGRPO00253 132 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 CACNB4O00305 520 aaPredicted RBP16.9■□□□□ 0.3
VIM-206ENST00000487938 CCNKO75909 580 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 OR2B6P58173 313 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 PSPHP78330 225 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 LARS2Q15031 903 aaKnown RBP16.9■□□□□ 0.3
VIM-206ENST00000487938 NXNL2Q5VZ03 156 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 BBS10Q8TAM1 723 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SUN3Q8TAQ9 357 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 NELL2Q99435 816 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 FAIM2Q9BWQ8 316 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 MARCH7Q9H992 704 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 SERGEFQ9UGK8 458 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 TRAPPC4Q9Y296 219 aa16.9■□□□□ 0.3
VIM-206ENST00000487938 A0A087WUU8 490 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 MAN2A2P49641 1150 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 TRA2BP62995 288 aaKnown RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 EFNB1P98172 346 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 HYAL2Q12891 473 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ZNF79Q15937 498 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 CD300LDQ6UXZ3 194 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ACOT4Q8N9L9 421 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 JPH3Q8WXH2 748 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 RAB7BQ96AH8 199 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ARMC5Q96C12 935 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 PRRC1Q96M27 445 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 SPATA5L1Q9BVQ7 753 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 PITHD1Q9GZP4 211 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 SAP130Q9H0E3 1048 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 RACGAP1Q9H0H5 632 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ABCB9Q9NP78 766 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 MRPS30Q9NP92 439 aaKnown RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 ACSL5Q9ULC5 683 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 GPR55Q9Y2T6 319 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 ASB4Q9Y574 426 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 DNMT3AQ9Y6K1 912 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 TAS2R41P59536 307 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 RAB8AP61006 207 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 HOXC5Q00444 222 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 TAB1Q15750 504 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 CLEC12AQ5QGZ9 265 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 AGAP6Q5VW22 663 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 RSBN1Q5VWQ0 802 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 RNLSQ5VYX0 342 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 VRK2Q86Y07 508 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 RAB42Q8N4Z0 105 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 CAPSLQ8WWF8 208 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 MS4A6EQ96DS6 147 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 C1GALT1C1Q96EU7 318 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 RNFT2Q96EX2 444 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ZNF764Q96H86 408 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 ASB16Q96NS5 453 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 AGAP4Q96P64 663 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 WDR26Q9H7D7 661 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 BCL2L10Q9HD36 194 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 PRDM7Q9NQW5 492 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 TOR4AQ9NXH8 423 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 CNIH4Q9P003 139 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.89■□□□□ 0.29
VIM-206ENST00000487938 CMAHPQ9Y471 501 aa16.89■□□□□ 0.29
VIM-206ENST00000487938 CPSF4LA6NMK7 179 aaKnown RBP16.88■□□□□ 0.29
VIM-206ENST00000487938 TSPAN19P0C672 248 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 MSL3P1P0C860 447 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 CPEP16870 476 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 RAB28P51157 221 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 SMSP52788 366 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 GAS1P54826 345 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 HNRNPA0Q13151 305 aaKnown RBP16.88■□□□□ 0.29
VIM-206ENST00000487938 IRF4Q15306 451 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 ENTPD8Q5MY95 495 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 ARMC4Q5T2S8 1044 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 FBXO46Q6PJ61 603 aaPredicted RBP16.88■□□□□ 0.29
VIM-206ENST00000487938 IL17RCQ8NAC3 791 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 TMEM145Q8NBT3 493 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 FGF11Q92914 225 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 BADQ92934 168 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 CTRCQ99895 268 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 TEX101Q9BY14 249 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 SYNPO2LQ9H987 977 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 SLC6A20Q9NP91 592 aa16.88■□□□□ 0.29
VIM-206ENST00000487938 MUC22E2RYF6 1773 aaPredicted RBP16.88■□□□□ 0.29
VIM-206ENST00000487938 AIFM1O95831 613 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms