RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ANK2Q01484 3957 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 K7EPI3 171 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 UBXN8O00124 270 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 UGT2B11O75310 529 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 CGAP01215 116 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 GBAP04062 536 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 MTHFD2P13995 350 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 UGT2B10P36537 528 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 CD79BP40259 229 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 DIO3P55073 304 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 NRG3P56975 720 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 RPP38P78345 283 aaKnown RBP13.89□□□□□ -0.19
MCF2L-228ENST00000487354 GAB1Q13480 694 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 HLA-DQA1Q5Y7H0 255 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 SLC30A6Q6NXT4 461 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 ZNF550Q7Z398 422 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 BTLAQ7Z6A9 289 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 ISCA2Q86U28 154 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 PHC2Q8IXK0 858 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 OR14L1PQ8NHC6 308 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 RDH11Q8TC12 318 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 OMA1Q96E52 524 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 ITPAQ9BY32 194 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 OPN3Q9H1Y3 402 aaPredicted RBP13.89□□□□□ -0.19
MCF2L-228ENST00000487354 ALG9Q9H6U8 611 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 EHD3Q9NZN3 535 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 ADGRE2Q9UHX3 823 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 FBXL2Q9UKC9 423 aa13.89□□□□□ -0.19
MCF2L-228ENST00000487354 GOLGA6L10A0A0M3HER8 536 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 C17orf51A8MQB3 221 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 CDH16O75309 829 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 SEC31AO94979 1220 aaKnown RBP13.88□□□□□ -0.19
MCF2L-228ENST00000487354 NAGAP17050 411 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 CHMP24386 653 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 KIR2DL2P43627 348 aaPredicted RBP13.88□□□□□ -0.19
MCF2L-228ENST00000487354 ARL4CP56559 192 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 CLDN15P56746 228 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 B3GALT5-AS1P59052 145 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 PDIA2Q13087 525 aaKnown RBP13.88□□□□□ -0.19
MCF2L-228ENST00000487354 SNTA1Q13424 505 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 ENPP6Q6UWR7 440 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 IFNEQ86WN2 208 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 GRAMD2AQ8IUY3 354 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 OR7G1Q8NGA0 311 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 WDR20Q8TBZ3 569 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 RNF138Q8WVD3 245 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 RBBP8Q99708 897 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 ACTR8Q9H981 624 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 ZNF701Q9NV72 531 aaPredicted RBP13.88□□□□□ -0.19
MCF2L-228ENST00000487354 NSMCE4AQ9NXX6 385 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 OPTCQ9UBM4 332 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 ZNF639Q9UID6 485 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 DLGAP4Q9Y2H0 992 aa13.88□□□□□ -0.19
MCF2L-228ENST00000487354 PRAMEF25A6NGN4 478 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 LRRC14BA6NHZ5 514 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 H0YIV9 168 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 KERAO60938 352 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CBR3O75828 277 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 SMNDC1O75940 238 aaKnown RBP eCLIP13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CBX7O95931 251 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 THBDP07204 575 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CPMP14384 443 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 SLC12A2P55011 1212 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 HMGCS1Q01581 520 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 DUSP2Q05923 314 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CUL3Q13618 768 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 EXOSC7Q15024 291 aaKnown RBP13.87□□□□□ -0.19
MCF2L-228ENST00000487354 GUSBP1Q15486 140 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 PRICKLE4Q2TBC4 344 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 KBTBD12Q3ZCT8 623 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 FAM111BQ6SJ93 734 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CYP20A1Q6UW02 462 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 NUP54Q7Z3B4 507 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 NUDT13Q86X67 352 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 TSPAN17Q96FV3 270 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 MED18Q9BUE0 208 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 ZNF226Q9NYT6 803 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 TAS2R10Q9NYW0 307 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 MAT2BQ9NZL9 334 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 KLRF1Q9NZS2 232 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 CES1P1Q9UKY3 287 aa13.87□□□□□ -0.19
MCF2L-228ENST00000487354 SUPT3HB4E1H0 165 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 ZIC3O60481 467 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 SUPT3HO75486 399 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 S100BP04271 92 aaPredicted RBP13.86□□□□□ -0.19
MCF2L-228ENST00000487354 CRHP06850 196 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 EPB42P16452 691 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 STMN1P16949 149 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 PTX3P26022 381 aaPredicted RBP13.86□□□□□ -0.19
MCF2L-228ENST00000487354 PIK3R1P27986 724 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 SRD5A2P31213 254 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 NEK2P51955 445 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 RAB10P61026 200 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 EEF1A1P68104 462 aaKnown RBP13.86□□□□□ -0.19
MCF2L-228ENST00000487354 PLCXD2Q0VAA5 305 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 TNK1Q13470 666 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 EEF1A1P5Q5VTE0 462 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 CMC1Q7Z7K0 106 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 LRRC8AQ8IWT6 810 aa13.86□□□□□ -0.19
MCF2L-228ENST00000487354 TEX9Q8N6V9 391 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms