RNA–Protein interactions for RNA: ENST00000486519.5

U2AF1-211, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 3

Gene U2AF1, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-211	ENST00000486519	MFAP3L	O75121	409 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	GABRB3	P28472	473 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	CETN2	P41208	172 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	HNRNPH2	P55795	449 aa	Known RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	CLDN20	P56880	219 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	DSCR9	P59020	149 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	IRF9	Q00978	393 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	TAB1	Q15750	504 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	PDCD2	Q16342	344 aa	Predicted RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	PPP1R3A	Q16821	1122 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	SLC30A6	Q6NXT4	461 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	CHMP1B	Q7LBR1	199 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	ST13P4	Q8IZP2	240 aa	Predicted RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	AGGF1	Q8N302	714 aa	eCLIP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	LRRC57	Q8N9N7	239 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	RIT1	Q92963	219 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	RHBDF1	Q96CC6	855 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	TACO1	Q9BSH4	297 aa	Known RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	GRIP2	Q9C0E4	1043 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	RPF2	Q9H7B2	306 aa	Known RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	KLRF1	Q9NZS2	232 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	PAK5	Q9P286	719 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	PTBP2	Q9UKA9	531 aa	Known RBP	13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	FBXO5	Q9UKT4	447 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	KCNE2	Q9Y6J6	123 aa		13.56	□□□□□ -0.24
U2AF1-211	ENST00000486519	PRAMEF25	A6NGN4	478 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	ANKDD1B	A6NHY2	528 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	PPM1B	O75688	479 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	TGFA	P01135	160 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	RHOXF2B	P0C7M4	288 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	CREB1	P16220	341 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	HIST1H1T	P22492	207 aa	Predicted RBP	13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	TMED10	P49755	219 aa	Known RBP	13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	THOC5	Q13769	683 aa	Known RBP	13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	BCL2A1	Q16548	175 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	LRRC8E	Q6NSJ5	796 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	CASC4	Q6P4E1	433 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	TMEM81	Q6P7N7	255 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	PLCZ1	Q86YW0	608 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	RNF175	Q8N4F7	328 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	TTL	Q8NG68	377 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	PROX1	Q92786	737 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	FOLH1B	Q9HBA9	442 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	WHRN	Q9P202	907 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	ARMCX1	Q9P291	453 aa		13.55	□□□□□ -0.24
U2AF1-211	ENST00000486519	TNFRSF21	O75509	655 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	WDR47	O94967	919 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	SCEL	O95171	688 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	PSMB1	P20618	241 aa	Known RBP	13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	GPX3	P22352	226 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	KCNC1	P48547	511 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	NEK2	P51955	445 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	RPP38	P78345	283 aa	Known RBP	13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	HMGCS1	Q01581	520 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	FBXO48	Q5FWF7	155 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	GCDH	Q92947	438 aa	Predicted RBP	13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	OMA1	Q96E52	524 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	ADAD1	Q96M93	576 aa	Known RBP	13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	KCNC2	Q96PR1	638 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	ZNF696	Q9H7X3	374 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	SLC17A6	Q9P2U8	582 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	DKKL1	Q9UK85	242 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	GPR52	Q9Y2T5	361 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	ZNF337	Q9Y3M9	751 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	COMMD10	Q9Y6G5	202 aa		13.54	□□□□□ -0.24
U2AF1-211	ENST00000486519	H2AFY	O75367	372 aa	Known RBP	13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	TNFRSF17	Q02223	184 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	SLAMF1	Q13291	335 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	HLA-DQA1	Q5Y7H0	255 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	FIGNL1	Q6PIW4	674 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	CCDC89	Q8N998	374 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	SNX31	Q8N9S9	440 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	OR6K3	Q8NGY3	331 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	NXNL1	Q96CM4	212 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	MS4A8	Q9BY19	250 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	OR10A5	Q9H207	317 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	OCEL1	Q9H607	264 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	NT5DC2	Q9H857	520 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	CXorf21	Q9HAI6	301 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	MAD1L1	Q9Y6D9	718 aa		13.53	□□□□□ -0.24
U2AF1-211	ENST00000486519	ARFGEF3	Q5TH69	2177 aa		13.52	□□□□□ -0.24
U2AF1-211	ENST00000486519	NPEPPSL1	A6NEC2	478 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	GCM2	O75603	506 aa	Predicted RBP	13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	PEPD	P12955	493 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	APEH	P13798	732 aa	Known RBP	13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	GNAZ	P19086	355 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	SRP14	P37108	136 aa	Known RBP	13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	BUD31	P41223	144 aa	Predicted RBP	13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	CDH11	P55287	796 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	NRG3	P56975	720 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	FGFBP1	Q14512	234 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	HSP90AA5P	Q58FG0	334 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	ANKRD22	Q5VYY1	191 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	PIWIL2	Q8TC59	973 aa	Known RBP	13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	KAT2A	Q92830	837 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	VPS39	Q96JC1	886 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	HBEGF	Q99075	208 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	TBCD	Q9BTW9	1192 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	ITPA	Q9BY32	194 aa		13.52	□□□□□ -0.25
U2AF1-211	ENST00000486519	TRIM54	Q9BYV2	358 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms