RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PFDN4Q9NQP4 134 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 HEY2Q9UBP5 337 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 VPS29Q9UBQ0 182 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 CAMK2AQ9UQM7 478 aa19.71■□□□□ 0.75
USP40-215ENST00000484528 GOLGA8RI6L899 631 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 DLX3O60479 287 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 NME6O75414 186 aaPredicted RBP19.7■□□□□ 0.74
USP40-215ENST00000484528 PCSK2P16519 638 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 BMP5P22003 454 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 UQCRC1P31930 480 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 PLCXD2Q0VAA5 305 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 ZNF678Q5SXM1 525 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 ARSKQ6UWY0 536 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 OMA1Q96E52 524 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 TMEM41AQ96HV5 264 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 LCORQ96JN0 433 aaPredicted RBP19.7■□□□□ 0.74
USP40-215ENST00000484528 ANKRA2Q9H9E1 313 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 GALNT9Q9HCQ5 603 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 NMRK1Q9NWW6 199 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 ZNF639Q9UID6 485 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 UTS2RQ9UKP6 389 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 CFL2Q9Y281 166 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 PCDHGB3Q9Y5G1 929 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 ZNF780BQ9Y6R6 833 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 ITPR3Q14573 2671 aa19.7■□□□□ 0.74
USP40-215ENST00000484528 HRNRQ86YZ3 2850 aaPredicted RBP19.7■□□□□ 0.74
USP40-215ENST00000484528 HSPB2A8KAH6 182 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 KRT6AP02538 564 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 KRT6BP04259 564 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 IL3P08700 152 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 ABHD2P08910 425 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 PTPN6P29350 595 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 HMOX2P30519 316 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 KRT6CP48668 564 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 RASA2Q15283 850 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 HSPB2Q16082 182 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 LGSNQ5TDP6 509 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 TIGD3Q6B0B8 471 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 GPRIN3Q6ZVF9 776 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 YRDCQ86U90 279 aaKnown RBP19.69■□□□□ 0.74
USP40-215ENST00000484528 HGDQ93099 445 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 ZNF681Q96N22 645 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 ZNF382Q96SR6 550 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 OSBPL11Q9BXB4 747 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 UGT2B28Q9BY64 529 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 KLRF1Q9NZS2 232 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 PSME2Q9UL46 239 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 MAPRE3Q9UPY8 281 aa19.69■□□□□ 0.74
USP40-215ENST00000484528 PCDH7O60245 1069 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 UGT2B11O75310 529 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 EPPINO95925 133 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 BMP7P18075 431 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 RAE1P78406 368 aaKnown RBP19.68■□□□□ 0.74
USP40-215ENST00000484528 HMGCS1Q01581 520 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 CSTF3Q12996 717 aaKnown RBP19.68■□□□□ 0.74
USP40-215ENST00000484528 VASNQ6EMK4 673 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 TIFABQ6ZNK6 161 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 LACC1Q8IV20 430 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 OR1J4Q8NGS1 313 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 METTL6Q8TCB7 284 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 EXOSC8Q96B26 276 aaKnown RBP19.68■□□□□ 0.74
USP40-215ENST00000484528 CTHRC1Q96CG8 243 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 KCNA7Q96RP8 456 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 ACPTQ9BZG2 426 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 PRDM14Q9GZV8 571 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 SERHLQ9NQF3 203 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 MCM8Q9UJA3 840 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 DLGAP4Q9Y2H0 992 aa19.68■□□□□ 0.74
USP40-215ENST00000484528 ABCA4P78363 2273 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 GNG14A0A1W2PPG7 69 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 AHRRA9YTQ3 701 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 DVL2O14641 736 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 RIPK2O43353 540 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 HSD3B1P14060 373 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 HSD3B2P26439 372 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 CEACAM8P31997 349 aaPredicted RBP19.67■□□□□ 0.74
USP40-215ENST00000484528 PTGDSP41222 190 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 EMDP50402 254 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 TRA2BP62995 288 aaKnown RBP19.67■□□□□ 0.74
USP40-215ENST00000484528 SCIMPQ6UWF3 145 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 NUP54Q7Z3B4 507 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 CCDC116Q8IYX3 515 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 FAM83FQ8NEG4 500 aaPredicted RBP19.67■□□□□ 0.74
USP40-215ENST00000484528 OR9A2Q8NGT5 310 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 RDH11Q8TC12 318 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 KAT2AQ92830 837 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 NTNG2Q96CW9 530 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 MTBPQ96DY7 904 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 HSPBAP1Q96EW2 488 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 APIPQ96GX9 242 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 TRIB1Q96RU8 372 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 EBPLQ9BY08 206 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 SLC24A3Q9HC58 644 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 TIMM22Q9Y584 194 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 MED12LQ86YW9 2145 aa19.67■□□□□ 0.74
USP40-215ENST00000484528 PRAMEF25A6NGN4 478 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 SNPHO15079 494 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ACOX3O15254 700 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ICOSLGO75144 302 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ULK1O75385 1050 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms