RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TPT1P8Q9HAU6 139 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 FOLH1BQ9HBA9 442 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 MMP25Q9NPA2 562 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 SLC25A37Q9NYZ2 338 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ZNF223Q9UK11 482 aaPredicted RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 HEMK1Q9Y5R4 338 aaPredicted RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 FREM2Q5SZK8 3169 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 TRBV5-3A0A0A0MS03 114 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 C2orf92A0A1B0GVN3 265 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 OR6C76A6NM76 312 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 B2RBV5 119 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 CLIC1O00299 241 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 UNC5CO95185 931 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 PSMG1O95456 288 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 C1QCP02747 245 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 HMGN2P05204 90 aaKnown RBP11.36□□□□□ -0.59
SDC1-206ENST00000482879 SERPINA7P05543 415 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 KRT16P08779 473 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 ITGAMP11215 1152 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 MATN1P21941 496 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 PRIM2P49643 509 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 UCNP55089 124 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 CASP9P55211 416 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 AP2B1P63010 937 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 RNF4P78317 190 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 MXRA7P84157 204 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 ZNF155Q12901 538 aaPredicted RBP11.36□□□□□ -0.59
SDC1-206ENST00000482879 LASP1Q14847 261 aaKnown RBP11.36□□□□□ -0.59
SDC1-206ENST00000482879 MYBPC3Q14896 1274 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 RUNDC3AQ59EK9 446 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 HLA-DQA1Q5Y7H0 255 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 ANGPTL8Q6UXH0 198 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 HACD2Q6Y1H2 254 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 C9orf40Q8IXQ3 194 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 CLEC1AQ8NC01 280 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 OR5L2Q8NGL0 311 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 PNPT1Q8TCS8 783 aaKnown RBP11.36□□□□□ -0.59
SDC1-206ENST00000482879 GIMAP5Q96F15 307 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 C16orf58Q96GQ5 468 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 ANKRD27Q96NW4 1050 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 SLC39A3Q9BRY0 314 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 YIPF4Q9BSR8 244 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 CPNE5Q9HCH3 593 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 GPATCH2Q9NW75 528 aa11.36□□□□□ -0.59
SDC1-206ENST00000482879 FAF1Q9UNN5 650 aaPredicted RBP11.36□□□□□ -0.59
SDC1-206ENST00000482879 FRYQ5TBA9 3013 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 A0A087WV48 116 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 A8MUI8 341 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 EVPLLA8MZ36 301 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 K7ENP7 123 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 FXYD1O00168 92 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 PRKNO60260 465 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 PPIBP23284 216 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 ITGA3P26006 1051 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 TMPRSS3P57727 454 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 RPS26P62854 115 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 VAC14Q08AM6 782 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 BNIP1Q12981 228 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 CHAF1BQ13112 559 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 EBPQ15125 230 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 ZNHIT3Q15649 155 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 NANOGP8Q6NSW7 305 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 MFSD12Q6NUT3 480 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 ZCCHC12Q6PEW1 402 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 INO80CQ6PI98 192 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 WDR53Q7Z5U6 358 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 RNF130Q86XS8 419 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 CDRT4Q8N9R6 151 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 KDF1Q8NAX2 398 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 OR8K3Q8NH51 312 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 FBXO27Q8NI29 283 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 FBXO30Q8TB52 745 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 THAP3Q8WTV1 239 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 SLC9A6Q92581 669 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 JADE3Q92613 823 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 THOC3Q96J01 351 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 VSTM2LQ96N03 204 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 GAL3ST4Q96RP7 486 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 HOPXQ9BPY8 73 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 CPPED1Q9BRF8 314 aaPredicted RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 THUMPD3Q9BV44 507 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 ITPAQ9BY32 194 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 ACTRT3Q9BYD9 372 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 WWTR1Q9GZV5 400 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 ING2Q9H160 280 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 RAD21L1Q9H4I0 556 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 NANOGQ9H9S0 305 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 LIN28AQ9H9Z2 209 aaKnown RBP11.35□□□□□ -0.59
SDC1-206ENST00000482879 DTX4Q9Y2E6 619 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 ACACBO00763 2458 aa11.35□□□□□ -0.59
SDC1-206ENST00000482879 TTC36A6NLP5 189 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 ALOX5P09917 674 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 ACP2P11117 423 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 GABRA3P34903 492 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 CRATP43155 626 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 PPICP45877 212 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 CCL11P51671 97 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 MTPNP58546 118 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 PSME3P61289 254 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms