RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 HIPK4Q8NE63 616 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 OR5AK3PQ8NH89 298 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 ADAMTS15Q8TE58 950 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 PTPMT1Q8WUK0 201 aaPredicted RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 RASSF5Q8WWW0 418 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 KAT2AQ92830 837 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 NXPE2Q96DL1 559 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 GIMAP5Q96F15 307 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 AURKBQ96GD4 344 aaPredicted RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 SENP5Q96HI0 755 aaPredicted RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 LPAR4Q99677 370 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 LMF2Q9BU23 707 aaKnown RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 BTBD2Q9BX70 525 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 TMEM121BQ9BXQ6 578 aaPredicted RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 PIGUQ9H490 435 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 IKZF5Q9H5V7 419 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 POLE3Q9NRF9 147 aa9.48□□□□□ -0.89
USP39-215ENST00000481409 PNO1Q9NRX1 252 aaKnown RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 FARSAQ9Y285 508 aaKnown RBP9.48□□□□□ -0.89
USP39-215ENST00000481409 KIF26BQ2KJY2 2108 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 RAD1O60671 282 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 FKBP6O75344 327 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 PDE5AO76074 875 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 CBX7O95931 251 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 IGKV3-11P04433 115 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ALOX5P09917 674 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ICAM2P13598 275 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 TCN2P20062 427 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 MAN2A2P49641 1150 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 CLCN2P51788 898 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 CRISP3P54108 245 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 PRKAG1P54619 331 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 POLE2P56282 527 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ID2Q02363 134 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 RIPK1Q13546 671 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 SELPLGQ14242 412 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ZNF267Q14586 743 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 PUM1Q14671 1186 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP39-215ENST00000481409 LASP1Q14847 261 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 MYBPC3Q14896 1274 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ADRM1Q16186 407 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 GLYATQ6IB77 296 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 REEP3Q6NUK4 255 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 AAGABQ6PD74 315 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 FAM111BQ6SJ93 734 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 RNF111Q6ZNA4 994 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 SZRD1Q7Z422 152 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 PATL1Q86TB9 770 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 LAPTM4BQ86VI4 370 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 IFNEQ86WN2 208 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 DTX1Q86Y01 620 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 PTOV1Q86YD1 416 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ZZZ3Q8IYH5 903 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 ZNF615Q8N8J6 731 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 BHLHE22Q8NFJ8 381 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 ADCY4Q8NFM4 1077 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 OR52R1Q8NGF1 315 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 OR1N1Q8NGS0 311 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 PMEPA1Q969W9 287 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 TP53INP1Q96A56 240 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 KIAA1143Q96AT1 154 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 PPWD1Q96BP3 646 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 DUS3LQ96G46 650 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 CLPTM1LQ96KA5 538 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 NSMCE2Q96MF7 247 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 TRNT1Q96Q11 434 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 SPATA5L1Q9BVQ7 753 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 SEMA4CQ9C0C4 833 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 OR10A5Q9H207 317 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 OR51I1Q9H343 314 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 SOX17Q9H6I2 414 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 EVA1AQ9H8M9 152 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 TRIM45Q9H8W5 580 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 BCL2L10Q9HD36 194 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 OLAHQ9NV23 265 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 FOXJ2Q9P0K8 574 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 RPS6KA6Q9UK32 745 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 MRTO4Q9UKD2 239 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 TCFL5Q9UL49 500 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 SAMD4AQ9UPU9 718 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 PTRH2Q9Y3E5 179 aaKnown RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 HEMK1Q9Y5R4 338 aaPredicted RBP9.47□□□□□ -0.89
USP39-215ENST00000481409 KNTC1P50748 2209 aa9.47□□□□□ -0.89
USP39-215ENST00000481409 A0A0G2JPF8 293 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 A0A1W2PS29 197 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 HNRNPCL2B2RXH8 293 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 HNRNPCL3B7ZW38 293 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 C5orf58C9J3I9 102 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 HMGN4O00479 90 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 CXCR6O00574 342 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 CDK2AP1O14519 115 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 TERTO14746 1132 aaKnown RBP9.46□□□□□ -0.9
USP39-215ENST00000481409 ACOX3O15254 700 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 CREG1O75629 220 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 NKX2-2O95096 273 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 DDAH2O95865 285 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 GPIP06744 558 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 TFPTP0C1Z6 253 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 CT62P0C5K7 136 aa9.46□□□□□ -0.9
USP39-215ENST00000481409 HNRNPCL4P0DMR1 293 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms