RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RGS6P49758 472 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 DUSP2Q05923 314 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 TMED1Q13445 227 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 TIMM50Q3ZCQ8 353 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 EXOSC6Q5RKV6 272 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 MFSD4BQ5TF39 518 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 COMTD1Q86VU5 262 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 FAM26EQ8N5C1 309 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 FGF11Q92914 225 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 BMFQ96LC9 184 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 OR7D2Q96RA2 312 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 ACTRT3Q9BYD9 372 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 POLR2J3Q9H1A7 115 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 SLC6A17Q9H1V8 727 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 SELENONQ9NZV5 590 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 MOSPD1Q9UJG1 213 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 URADA6NGE7 173 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 DUXAA6NLW8 204 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 C2CD4DB7Z1M9 353 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 BTN3A3O00478 584 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 POU2F1P14859 743 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 MANEAQ5SRI9 462 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 C18orf63Q68DL7 685 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 PODNL1Q6PEZ8 512 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 ENPP7Q6UWV6 458 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 RBM45Q8IUH3 476 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 KLHL6Q8WZ60 621 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 MRGPRX1Q96LB2 322 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 OR2A14Q96R47 310 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 FNDC11Q9BVV2 318 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 MROQ9BYG7 248 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 POLR2J2Q9GZM3 115 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 DCSTAMPQ9H295 470 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 TRIM45Q9H8W5 580 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 PILRAQ9UKJ1 303 aa11.48□□□□□ -0.57
PTPRF-212ENST00000477970 LSM2Q9Y333 95 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 RPL36Q9Y3U8 105 aaKnown RBP11.48□□□□□ -0.57
PTPRF-212ENST00000477970 PRR23AA6NEV1 266 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 METTL15A6NJ78 407 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SLC31A1O15431 190 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 PRKRAO75569 313 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 PTHP01270 115 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CD40LGP29965 261 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 MAT2AP31153 395 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CSTF2P33240 577 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 BUD31P41223 144 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CDK5Q00535 292 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SUZ12Q15022 739 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CCDC116Q8IYX3 515 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 TMCO5AQ8N6Q1 288 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 TOR1AIP2Q8NFQ8 470 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 OR2A5Q96R48 311 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 WFDC6Q9BQY6 131 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SLC38A1Q9H2H9 487 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SRMSQ9H3Y6 488 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SIAEQ9HAT2 523 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 LYRM4Q9HD34 91 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 MRPS18AQ9NVS2 196 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 KCMF1Q9P0J7 381 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 FBXW2Q9UKT8 454 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 ENTPD2Q9Y5L3 495 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 TAF4O00268 1085 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 KPNA4O00629 521 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 ERAL1O75616 437 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 EML2O95834 649 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SLC35G6P0C7Q6 338 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 GADD45AP24522 165 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 GSSP48637 474 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CDC73Q6P1J9 531 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 TMEM107Q6UX40 140 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 FAM20CQ8IXL6 584 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CENPSQ8N2Z9 138 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 OR4E2Q8NGC2 313 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 VANGL1Q8TAA9 524 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 NECAB3Q96P71 396 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 MS4A4EQ96PG1 132 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 PTGFRNQ9P2B2 879 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 IFT52Q9Y366 437 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 MDC1Q14676 2089 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 NME6O75414 186 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 ACADMP11310 421 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 IFNGR2P38484 337 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CLK1P49759 484 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 NUDT6P53370 316 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 LASP1Q14847 261 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 ARMCX4Q5H9R4 360 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 EOGTQ5NDL2 527 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 TMEM236Q5W0B7 351 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 NIPAL1Q6NVV3 410 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 FBXO42Q6P3S6 717 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 CASP12Q6UXS9 341 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 GDPGP1Q6ZNW5 385 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 ZNF554Q86TJ5 538 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 OR2L13Q8N349 312 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 LRRC25Q8N386 305 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 OR6T1Q8NGN1 323 aa11.47□□□□□ -0.57
PTPRF-212ENST00000477970 RPL3LQ92901 407 aaKnown RBP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPRF-212ENST00000477970 SLC6A14Q9UN76 642 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms