RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TDRPQ86YL5 185 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 GBP7Q8N8V2 638 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 EPS8L3Q8TE67 593 aaKnown RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 ASB5Q8WWX0 329 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 ZNF597Q96LX8 424 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 NODALQ96S42 347 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 SECISBP2Q96T21 854 aaKnown RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 EBPLQ9BY08 206 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 LDAHQ9H6V9 325 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 SIRT5Q9NXA8 310 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 DCDC2Q9UHG0 476 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 BCAP29Q9UHQ4 241 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 UTS2RQ9UKP6 389 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 ACAD8Q9UKU7 415 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 EXO1Q9UQ84 846 aaKnown RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 MED12Q93074 2177 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 FIGNL2A6NMB9 653 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 B4DXG7 233 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CTIFO43310 598 aaKnown RBP12.9□□□□□ -0.34
UPF3A-204ENST00000475218 GLRA3O75311 464 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 PPM1BO75688 479 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 MSX1P28360 303 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 TIA1P31483 386 aaKnown RBP eCLIP12.9□□□□□ -0.34
UPF3A-204ENST00000475218 NAGLUP54802 743 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CRYZQ08257 329 aaKnown RBP12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CEBPEQ15744 281 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 TBCELQ5QJ74 424 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 HLA-DQA1Q5Y7H0 255 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 B3GNT6Q6ZMB0 384 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 MEX3BQ6ZN04 569 aaKnown RBP12.9□□□□□ -0.34
UPF3A-204ENST00000475218 FRMD7Q6ZUT3 714 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 ACAD11Q709F0 780 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CCDC116Q8IYX3 515 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CCNYL1Q8N7R7 359 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 ZNF675Q8TD23 568 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 SARAFQ96BY9 339 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 FAIM2Q9BWQ8 316 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 RUBCNLQ9H714 662 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 MID1IP1Q9NPA3 183 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 NMRK1Q9NWW6 199 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 EHD3Q9NZN3 535 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 C15orf41Q9Y2V0 281 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 CCL27Q9Y4X3 112 aa12.9□□□□□ -0.34
UPF3A-204ENST00000475218 TEP1Q99973 2627 aaKnown RBP12.9□□□□□ -0.35
UPF3A-204ENST00000475218 TP53I11O14683 189 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 WDR1O75083 606 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 UGT2B11O75310 529 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 HPNP05981 417 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CT45A8P0DMV1 189 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CT45A9P0DMV2 189 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 GDF1P27539 372 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CDK9P50750 372 aaKnown RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 WNT3P56703 355 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 SPIN4Q56A73 249 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CT45A2Q5DJT8 189 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 DCST1Q5T197 706 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 C1orf185Q5T7R7 199 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 WLSQ5T9L3 541 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 ULK2Q8IYT8 1036 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 OR9A2Q8NGT5 310 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 KAT2AQ92830 837 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 EXOSC8Q96B26 276 aaKnown RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 OMA1Q96E52 524 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 C14orf79Q96F83 325 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TMEM41AQ96HV5 264 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 LCORQ96JN0 433 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 ANKZF1Q9H8Y5 726 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 GALNT9Q9HCQ5 603 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 GPR55Q9Y2T6 319 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 C2orf72A6NCS6 295 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CAPN14A8MX76 684 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TO15178 435 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 SNX4O95219 450 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 MYL2P10916 166 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 DRD2P14416 443 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 NAGAP17050 411 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 DRD5P21918 477 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 PTPN6P29350 595 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CRHR1P34998 444 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 PPICP45877 212 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TMED10P49755 219 aaKnown RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 DLX5P56178 289 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 NRG3P56975 720 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 CORO7P57737 925 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 DNAJB13P59910 316 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 BTKQ06187 659 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 ACSM2AQ08AH3 577 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 ACSM2BQ68CK6 577 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TMEM81Q6P7N7 255 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 NPSR1Q6W5P4 371 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TRIM46Q7Z4K8 759 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 NAXEQ8NCW5 288 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 OR7G2Q8NG99 324 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 UBLCP1Q8WVY7 318 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-204ENST00000475218 VSTM2LQ96N03 204 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 BTBD9Q96Q07 612 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 TIMP4Q99727 224 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 SLC35C2Q9NQQ7 365 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 PSME2Q9UL46 239 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms