RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PTPN2P17706 415 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TAS2R19P59542 299 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 POU6F2P78424 691 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 HTD2P86397 168 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 OGDHQ02218 1023 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 WRAP53Q9BUR4 548 aaKnown RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 MFFQ9GZY8 342 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 LHPPQ9H008 270 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 SEC61A2Q9H9S3 476 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 KCNIP2Q9NS61 270 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 SYPP08247 313 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ZDHHC11BP0C7U3 371 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 OSMP13725 252 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 GNB3P16520 340 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 IL4RP24394 825 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 MLLT3P42568 568 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 RPL23AP62750 156 aaKnown RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SCAPQ12770 1279 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 RBMS2Q15434 407 aaKnown RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TFAP2CQ92754 450 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 PITHD1Q9GZP4 211 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SLC22A7Q9Y694 548 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 LRRC37A3O60309 1634 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF142P52746 1687 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 EMC8O43402 210 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 EPHX1P07099 455 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 RAB3AP20336 220 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 VIPR1P32241 457 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 B3GNT7Q8NFL0 401 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ZFAND1Q8TCF1 268 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 IL12RB2Q99665 862 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 OPRL1P41146 370 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 LRRC32Q14392 662 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TMEM41BQ5BJD5 291 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ALKBH2Q6NS38 261 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SLC39A4Q6P5W5 647 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 CNIH2Q6PI25 160 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TPRG1Q6ZUI0 275 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 LILRB2Q8N423 598 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SAMD11Q96NU1 681 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 GPR20Q99678 358 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 NAA11Q9BSU3 229 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 OR52A5Q9H2C5 316 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 PRMT8Q9NR22 394 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SMCO4Q9NRQ5 59 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 VNN3Q9NY84 501 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 F5P12259 2224 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TP53I11O14683 189 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 PIP5K1CO60331 668 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 NFYAP23511 347 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 PTH2RP49190 550 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 GPR176Q14439 515 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 LRRC37A5PQ49AS3 106 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TECRLQ5HYJ1 363 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 SLC6A19Q695T7 634 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF574Q6ZN55 896 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 TAC4Q86UU9 113 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 NRROSQ86YC3 692 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 LACC1Q8IV20 430 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 RAB7BQ96AH8 199 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 POLMQ9NP87 494 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF701Q9NV72 531 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-209ENST00000472056 MRC1P22897 1456 aa12.71□□□□□ -0.37
COL6A3-209ENST00000472056 BLACEA4D250 179 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF850A8MQ14 1090 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 BLOC1S5-TXNDC5H3BN57 136 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 OR7A17O14581 309 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 TO15178 435 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 BEST1O76090 585 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 TFPTP0C1Z6 253 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 CTNNB1P35222 781 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 ATXN7L3Q14CW9 347 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 GPR19Q15760 415 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 AGAP7PQ5VUJ5 663 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 CD300LGQ6UXG3 332 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 GATA6Q92908 595 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 MSI2Q96DH6 328 aaKnown RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 UGT2A1Q9Y4X1 527 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 AGTRAPQ6RW13 159 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 CNIH3Q8TBE1 160 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 PHYHIPQ92561 330 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 SIX2Q9NPC8 291 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 COL14A1Q05707 1796 aaKnown RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF705FA8MVS1 300 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 JUNP05412 331 aaKnown RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 MMP2P08253 660 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF705DP0CH99 300 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF705BP0CI00 300 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-209ENST00000472056 STT3AP46977 705 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 RSU1Q15404 277 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 SLC14A2Q15849 920 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 TATDN3Q17R31 274 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 HORMAD2Q8N7B1 307 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 OR4K17Q8NGC6 315 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 FAM110BQ8TC76 370 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 SPTSSAQ969W0 71 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 FCRL1Q96LA6 429 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 STRA6Q9BX79 667 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 EMC7Q9NPA0 242 aa12.71□□□□□ -0.38
COL6A3-209ENST00000472056 OR6C74A6NCV1 312 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms