RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF843Q8N446 348 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 HORMAD2Q8N7B1 307 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 VPS37AQ8NEZ2 397 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 PSMA8Q8TAA3 256 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 SLC22A8Q8TCC7 542 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 VSTM2LQ96N03 204 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 RILPQ96NA2 401 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 SIGLEC12Q96PQ1 595 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 ITPAQ9BY32 194 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 NEUROD4Q9HD90 331 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 SIRT3Q9NTG7 399 aaPredicted RBP11.05□□□□□ -0.64
VPS13D-204ENST00000469054 HPF1Q9NWY4 346 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 NTMQ9P121 344 aa11.05□□□□□ -0.64
VPS13D-204ENST00000469054 HEMK1Q9Y5R4 338 aaPredicted RBP11.05□□□□□ -0.64
VPS13D-204ENST00000469054 DOCK10Q96BY6 2186 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 B8ZZF3 427 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 C9JVG2 144 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 CFLARO15519 480 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 EMC8O43402 210 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 SUV39H1O43463 412 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 NEURL1O76050 574 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 PSMG1O95456 288 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 PGRP06401 933 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 CD46P15529 392 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 DRD5P21918 477 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 SOX3P41225 446 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 DGKQP52824 942 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 GYS2P54840 703 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 STX1BP61266 288 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 HBA1P69905 142 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 IRX1P78414 480 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-204ENST00000469054 COLEC12Q5KU26 742 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 SLC25A25Q6KCM7 469 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 PAOXQ6QHF9 649 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 OPN5Q6U736 354 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 LYPD8Q6UX82 237 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 IL20RBQ6UXL0 311 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 ZNF227Q86WZ6 799 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 CYP4Z2PQ8N1L4 340 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 Q8NA96 180 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 MDS2Q8NDY4 140 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 HSPBAP1Q96EW2 488 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 CHMP6Q96FZ7 201 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 LCORQ96JN0 433 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-204ENST00000469054 SGCZQ96LD1 299 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 NXF5Q9H1B4 397 aaKnown RBP11.04□□□□□ -0.64
VPS13D-204ENST00000469054 FOLH1BQ9HBA9 442 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 C3orf14Q9HBI5 128 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 FAM120CQ9NX05 1096 aaKnown RBP11.04□□□□□ -0.64
VPS13D-204ENST00000469054 LUZP4Q9P127 313 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 PCDHGB4Q9UN71 923 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 ERVK-11Q9UQG0 969 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 GPR55Q9Y2T6 319 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-204ENST00000469054 SNX8Q9Y5X2 465 aa11.04□□□□□ -0.64
VPS13D-204ENST00000469054 ZFYVE26Q68DK2 2539 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 FRG2CA6NGY1 282 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CAPN14A8MX76 684 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 TO15178 435 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ACOX3O15254 700 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ERN1O75460 977 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 SLC25A12O75746 678 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 SORBS2O94875 1100 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 IL6P05231 212 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ABCB1P08183 1280 aaPredicted RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 FBXO45P0C2W1 286 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CT45A8P0DMV1 189 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CT45A9P0DMV2 189 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CCT3P49368 545 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ATP4BP51164 291 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 POLR2JP52435 117 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ARFIP2P53365 341 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 PRKAG1P54619 331 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 NRG3P56975 720 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 PRR5P85299 388 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 SQLEQ14534 574 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ZNF791Q3KP31 576 aaPredicted RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CT45A2Q5DJT8 189 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ZNF766Q5HY98 468 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 METTL21CQ5VZV1 264 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 RPUSD3Q6P087 351 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 NPSR1Q6W5P4 371 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 TMEM64Q6YI46 380 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ANKRD46Q86W74 232 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 DND1Q8IYX4 353 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CLECL1Q8IZS7 167 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 NUP43Q8NFH3 380 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 OR9I1Q8NGQ6 314 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 TMEM125Q96AQ2 219 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 SPACA9Q96E40 222 aaPredicted RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 FAM120BQ96EK7 910 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 GIMAP5Q96F15 307 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 SCMH1Q96GD3 660 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 C5orf34Q96MH7 638 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 BTBD9Q96Q07 612 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 OR52E6Q96RD3 313 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 TMEM120AQ9BXJ8 343 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 TRIM4Q9C037 500 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 CXorf36Q9H7Y0 433 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 BTNL2Q9UIR0 455 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms