RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	ZNF780B	Q9Y6R6	833 aa		11.43	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCDC168	Q8NDH2	2452 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047		A0A0G2JNJ9	132 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	GNG14	A0A1W2PPG7	69 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	PPM1B	O75688	479 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	SNX4	O95219	450 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	ABCB1	P08183	1280 aa	Predicted RBP	11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	MYL2	P10916	166 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	DRD2	P14416	443 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	PCSK2	P16519	638 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	NAGA	P17050	411 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	MSX1	P28360	303 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	SSTR2	P30874	369 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	ADH7	P40394	386 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	SLCO1A2	P46721	670 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	MRPS35	P82673	323 aa	Known RBP	11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	ACSM2A	Q08AH3	577 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	CEBPE	Q15744	281 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	ZNF628	Q5EBL2	1059 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	C1orf185	Q5T7R7	199 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	TMEM198	Q66K66	360 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	ACSM2B	Q68CK6	577 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	DESI1	Q6ICB0	168 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	MEX3B	Q6ZN04	569 aa	Known RBP	11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	FRMD7	Q6ZUT3	714 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	TDRP	Q86YL5	185 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	OR52R1	Q8NGF1	315 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	C16orf78	Q8WTQ4	265 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	HGD	Q93099	445 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCDC126	Q96EE4	140 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	HSPBAP1	Q96EW2	488 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	TMEM41A	Q96HV5	264 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	LCOR	Q96JN0	433 aa	Predicted RBP	11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	EXO5	Q9H790	373 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	L2HGDH	Q9H9P8	463 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	MID1IP1	Q9NPA3	183 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047		Q9UFV3	132 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	BCAP29	Q9UHQ4	241 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	C15orf41	Q9Y2V0	281 aa		11.42	□□□□□ -0.58
CPSF4-208	ENST00000452047	HRNR	Q86YZ3	2850 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCDC151	A5D8V7	595 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	T	O15178	435 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	ACOX3	O15254	700 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PLIN3	O60664	434 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	HPN	P05981	417 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	HOXD4	P09016	255 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	GABRA1	P14867	456 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	DRD5	P21918	477 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CRHR1	P34998	444 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PTGDS	P41222	190 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PPIC	P45877	212 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	TRPC1	P48995	793 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CDK9	P50750	372 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	NAGLU	P54802	743 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	RPP38	P78345	283 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CRYZ	Q08257	329 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	HEPACAM	Q14CZ8	416 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCDC153	Q494R4	210 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	SCIMP	Q6UWF3	145 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PACS2	Q86VP3	889 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	ULK2	Q8IYT8	1036 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCDC116	Q8IYX3	515 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	LIX1	Q8N485	282 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	CCNYL1	Q8N7R7	359 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	OR9A2	Q8NGT5	310 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	EPS8L3	Q8TE67	593 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	EXOSC8	Q96B26	276 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	ERP27	Q96DN0	273 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	OMA1	Q96E52	524 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	GNRHR2	Q96P88	292 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	BTBD9	Q96Q07	612 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	NODAL	Q96S42	347 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	EBPL	Q9BY08	206 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	ANKRA2	Q9H9E1	313 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PPCS	Q9HAB8	311 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	TNFRSF12A	Q9NP84	129 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	KCNJ16	Q9NPI9	418 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	SLC35C2	Q9NQQ7	365 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	EHD3	Q9NZN3	535 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	PRODH2	Q9UF12	536 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	TEP1	Q99973	2627 aa	Known RBP	11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	KIAA1549	Q9HCM3	1950 aa		11.41	□□□□□ -0.58
CPSF4-208	ENST00000452047	FRG2C	A6NGY1	282 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	ESPN	B1AK53	854 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	CDH16	O75309	829 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	UGT2B11	O75310	529 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	ANXA4	P09525	319 aa	Predicted RBP	11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	KRT15	P19012	456 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	ELAVL4	P26378	380 aa	Known RBP	11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	PTPN6	P29350	595 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	GSTM5	P46439	218 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	ZFP36L2	P47974	494 aa	Known RBP	11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	MASP1	P48740	699 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	DNAJB13	P59910	316 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	KRTAP10-9	P60411	292 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	NAA20	P61599	178 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	DCAF7	P61962	342 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	ZNF763	Q0D2J5	394 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	PLCXD2	Q0VAA5	305 aa		11.4	□□□□□ -0.58
CPSF4-208	ENST00000452047	RIPPLY2	Q5TAB7	128 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms