RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 PRSS58Q8IYP2 241 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 RAB42Q8N4Z0 105 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 GOT1L1Q8NHS2 421 aaPredicted RBP11.22□□□□□ -0.61
PTPRN-204ENST00000423636 YTHDF1Q9BYJ9 559 aaKnown RBP11.22□□□□□ -0.61
PTPRN-204ENST00000423636 MED20Q9H944 212 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 C14orf119Q9NWQ9 140 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 PSORS1C1Q9UIG5 152 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 ASB4Q9Y574 426 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 RTTNQ86VV8 2226 aa11.22□□□□□ -0.61
PTPRN-204ENST00000423636 SERTM1A2A2V5 107 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 OR2A25A4D2G3 310 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 CLCA1A8K7I4 914 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 TLR4O00206 839 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 TGFBR2P37173 567 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 TAS2R41P59536 307 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 STXBP1P61764 594 aaKnown RBP11.21□□□□□ -0.61
PTPRN-204ENST00000423636 SHC2P98077 582 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 RUNX2Q13950 521 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 CRB2Q5IJ48 1285 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 PRAMEF17Q5VTA0 474 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 NUDT18Q6ZVK8 323 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 PRICKLE2Q7Z3G6 844 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 TAF8Q7Z7C8 310 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 MCFD2Q8NI22 146 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 OR7D2Q96RA2 312 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 WASH6PQ9NQA3 447 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 EVA1BQ9NVM1 165 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 PCDH15Q96QU1 1955 aa11.21□□□□□ -0.61
PTPRN-204ENST00000423636 HRKO00198 91 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 PEX12O00623 359 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 CTDSP2O14595 271 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 SLC16A1P53985 500 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 FAM46DQ8NEK8 389 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 FAM3CQ92520 227 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 RSC1A1Q92681 617 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 TRMT61AQ96FX7 289 aaKnown RBP11.21□□□□□ -0.62
PTPRN-204ENST00000423636 TMEM38AQ9H6F2 299 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 HRASLS2Q9NWW9 162 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 ANKMY1Q9P2S6 941 aa11.21□□□□□ -0.62
PTPRN-204ENST00000423636 PLRG1O43660 514 aaKnown RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 JUNBP17275 347 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 RHCEP18577 417 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 NT5EP21589 574 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 TTKP33981 857 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 RPA4Q13156 261 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GINS1Q14691 196 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SNAPC1Q16533 368 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GXYLT1Q4G148 440 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SNAP47Q5SQN1 464 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 KIAA1161Q6NSJ0 714 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CDC73Q6P1J9 531 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ANKRD13BQ86YJ7 626 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GRHL3Q8TE85 626 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 UCK2Q9BZX2 261 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GABARAPL1Q9H0R8 117 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 P2RX2Q9UBL9 471 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 A4GNTQ9UNA3 340 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 POFUT2Q9Y2G5 429 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 PCDHGA4Q9Y5G9 962 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CCDC85CA6NKD9 419 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SSX4O60224 188 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ANXA8P13928 327 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CBLP22681 906 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CDC42P60953 191 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GRSF1Q12849 480 aaKnown RBP eCLIP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 TOP3AQ13472 1001 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ALG11Q2TAA5 492 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ZNF829Q3KNS6 432 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 C10orf62Q5T681 223 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 PGBD2Q6P3X8 592 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 YIPF6Q96EC8 236 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 DDX31Q9H8H2 851 aaKnown RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 FAM60AQ9NP50 221 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 POLMQ9NP87 494 aaPredicted RBP11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SEMA4GQ9NTN9 838 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SLC13A4Q9UKG4 626 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SLC17A4Q9Y2C5 497 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CSNK1G3Q9Y6M4 447 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SH3PXD2BA1X283 911 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 IFNA14P01570 189 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 INHBBP09529 407 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ITGA2P17301 1181 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CMPK1P30085 196 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 LTBRP36941 435 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 KCNJ5P48544 419 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 NDUFAF6Q330K2 333 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CASP12Q6UXS9 341 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 HSDL2Q6YN16 418 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 DGAT2L6Q6ZPD8 337 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SPATC1Q76KD6 591 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 PRSS48Q7RTY5 328 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ZAR1Q86SH2 424 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 CYP4Z2PQ8N1L4 340 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 BBS1Q8NFJ9 593 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 OR4N2Q8NGD1 307 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 TMEM255BQ8WV15 326 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 GATAD2BQ8WXI9 593 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 SLC35A4Q96G79 324 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 LRR1Q96L50 414 aa11.2□□□□□ -0.62
PTPRN-204ENST00000423636 ZNF607Q96SK3 696 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms