RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 GOLGA8NF8WBI6 632 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 UPK1AO00322 258 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 TO15178 435 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 TGDSO95455 350 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 SP1P08047 785 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 CD46P15529 392 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 DDX5P17844 614 aaKnown RBP17.21■□□□□ 0.35
PTCD3-204ENST00000418628 WNT3P56703 355 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 FOXK1P85037 733 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 OC90Q02509 493 aaPredicted RBP17.21■□□□□ 0.35
PTCD3-204ENST00000418628 NTRK2Q16620 822 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 SLC25A25Q6KCM7 469 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 TMEM107Q6UX40 140 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 SPATA19Q7Z5L4 167 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 NATD1Q8N6N6 113 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 TMEM178AQ8NBL3 297 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 OR8J2Q8NGG1 315 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 ZFP28Q8NHY6 868 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 OR52B2Q96RD2 323 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 TRIM4Q9C037 500 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 BHLHE41Q9C0J9 482 aaPredicted RBP17.21■□□□□ 0.35
PTCD3-204ENST00000418628 HPF1Q9NWY4 346 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 SH3BP4Q9P0V3 963 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 GPR55Q9Y2T6 319 aaPredicted RBP17.21■□□□□ 0.35
PTCD3-204ENST00000418628 GPR45Q9Y5Y3 372 aa17.21■□□□□ 0.35
PTCD3-204ENST00000418628 SCN2BO60939 215 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CT45A8P0DMV1 189 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CT45A9P0DMV2 189 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 MAP3K8P41279 467 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 PPICP45877 212 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 MRPL19P49406 292 aaKnown RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CDK9P50750 372 aaKnown RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 NR0B1P51843 470 aaKnown RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 DCAF7P61962 342 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 HSPB3Q12988 150 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CT45A2Q5DJT8 189 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 EXOSC6Q5RKV6 272 aaKnown RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CPTPQ5TA50 214 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 NPSR1Q6W5P4 371 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 RTL4Q6ZR62 310 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 FAM47EQ6ZV65 393 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 ARFGAP2Q8N6H7 521 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 PSD4Q8NDX1 1056 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 NTNG2Q96CW9 530 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 HSPBAP1Q96EW2 488 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 LCORQ96JN0 433 aaPredicted RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 SGCZQ96LD1 299 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 C5orf34Q96MH7 638 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 FRMD6Q96NE9 622 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 SLX1AQ9BQ83 275 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CLMPQ9H6B4 373 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 FOLH1BQ9HBA9 442 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 ATAD3AQ9NVI7 634 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 ASF1BQ9NVP2 202 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 BCAP29Q9UHQ4 241 aa17.2■□□□□ 0.34
PTCD3-204ENST00000418628 CHCHD2Q9Y6H1 151 aaPredicted RBP17.2■□□□□ 0.34
PTCD3-204ENST00000418628 USP9XQ93008 2570 aaPredicted RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 DIDO1Q9BTC0 2240 aaKnown RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 FRG2CA6NGY1 282 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 ACOX3O15254 700 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 EDF1O60869 148 aaKnown RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 COQ9O75208 318 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 DRD5P21918 477 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 TDGF1P3P51864 188 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 PHC1P78364 1004 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 PSG6Q00889 435 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 DPY19L1Q2PZI1 675 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 LSM12Q3MHD2 195 aaKnown RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 HSP90B2PQ58FF3 399 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 IL20RBQ6UXL0 311 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 GALNTL5Q7Z4T8 443 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 TAGAPQ8N103 731 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 CISD2Q8N5K1 135 aaKnown RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 CEP70Q8NHQ1 597 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 GRHL3Q8TE85 626 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 PAQR8Q8TEZ7 354 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 GIMAP5Q96F15 307 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 TEX37Q96LM6 180 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 DUSP26Q9BV47 211 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 CCDC134Q9H6E4 229 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 KLHL1Q9NR64 748 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 DEPPQ9NTK1 212 aa17.19■□□□□ 0.34
PTCD3-204ENST00000418628 KLF13Q9Y2Y9 288 aaPredicted RBP17.19■□□□□ 0.34
PTCD3-204ENST00000418628 NME6O75414 186 aaPredicted RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 ABCD3P28288 659 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 ZFP36L2P47974 494 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 CLNS1AP54105 237 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 MANFP55145 182 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 PMP22Q01453 160 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 PDCD4Q53EL6 469 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 HLA-DQA1Q5Y7H0 255 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 TMEM198Q66K66 360 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 FAR1Q8WVX9 515 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 TMEM125Q96AQ2 219 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 PRPF18Q99633 342 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 EBF4Q9BQW3 602 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 LMF2Q9BU23 707 aaKnown RBP17.18■□□□□ 0.34
PTCD3-204ENST00000418628 DPY30Q9C005 99 aa17.18■□□□□ 0.34
PTCD3-204ENST00000418628 NEUROD4Q9HD90 331 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms