RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CXorf56Q9H5V9 222 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 C14orf105Q9NVL8 296 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 USP22Q9UPT9 525 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 APC2O95996 2303 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CDC14CA4D256 554 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 PIAS2O75928 621 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SNAP29O95721 258 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FESP07332 822 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 RETP07949 1114 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 BCKDHBP21953 392 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 NR4A1P22736 598 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 PSMA3P25788 255 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CAPZBP47756 277 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CD47Q08722 323 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 VEZF1Q14119 521 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SYPL1Q16563 259 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SHQ1Q6PI26 577 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 KIAA0907Q7Z7F0 614 aaPredicted RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 SERPINA11Q86U17 422 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 C1orf210Q8IVY1 113 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 ENDOVQ8N8Q3 282 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 CDS1Q92903 461 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 MS4A6EQ96DS6 147 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SPNS1Q9H2V7 528 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 PPP4R1LQ9P1A2 415 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 ZNF624Q9P2J8 865 aaPredicted RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 ENPP4Q9Y6X5 453 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 LOC100130705A0A1B0GUX0 176 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 IRGMA1A4Y4 181 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMX2-CTNND1H3BSU7 103 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CDC40O60508 579 aaKnown RBP eCLIP8.56□□□□□ -1.04
LIG4-202ENST00000405925 PCGF2P35227 344 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 SMSP52788 366 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CSNK2BP67870 215 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 HLA-BQ31612 363 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMPRSS11AQ6ZMR5 421 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ZNF595Q8IYB9 648 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ANKFN1Q8N957 763 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ZNF671Q8TAW3 534 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMEM234Q8WY98 164 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 COX14Q96I36 57 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 NECAB3Q96P71 396 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 ADOQ96SZ5 270 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TBX5Q99593 518 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TRPV5Q9NQA5 729 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 MGAT4BQ9UQ53 548 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 LOC105369274A0A096LPK9 316 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 LOC102723532A0A0G2JNH3 316 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 SMIM31A0A1B0GVY4 71 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 FAM227AF5H4B4 570 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 PGRMC2O15173 223 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TLX2O43763 284 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMPRSS11DO60235 418 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 PRAMEF10O60809 474 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 PAPLNO95428 1278 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CSF2P04141 144 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 RHCEP18577 417 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 SIGLEC14Q08ET2 396 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 PIN1Q13526 163 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 OR4N4Q8N0Y3 316 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 HORMAD2Q8N7B1 307 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 EFHD2Q96C19 240 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMCO6Q96DC7 493 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 MPP4Q96JB8 637 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 MSLNLQ96KJ4 702 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CPPED1Q9BRF8 314 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 FAM192AQ9GZU8 254 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TPK1Q9H3S4 243 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CXorf36Q9H7Y0 433 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 DKKL1Q9UK85 242 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 EFCAB9A8MZ26 197 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 BRINP1O60477 761 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ETHE1O95571 254 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 GLB1P16278 677 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 CDH15P55291 814 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 DEFA1P59665 94 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 DEFA3P59666 94 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 MYBPC3Q14896 1274 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 FAM71E1Q6IPT2 247 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 OAFQ86UD1 273 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 LAS2Q8IYD9 372 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 GOLM1Q8NBJ4 401 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ABHD11Q8NFV4 315 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 BAHD1Q8TBE0 780 aaPredicted RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 PIK3R3Q92569 461 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 C16orf58Q96GQ5 468 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 GLIPR2Q9H4G4 154 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 KAT8Q9H7Z6 458 aaKnown RBP8.56□□□□□ -1.04
LIG4-202ENST00000405925 EBF1Q9UH73 591 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 TMEM5Q9Y2B1 443 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 R4GN57 208 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 MYO16Q9Y6X6 1858 aa8.56□□□□□ -1.04
LIG4-202ENST00000405925 ZNF195O14628 629 aa8.55□□□□□ -1.04
LIG4-202ENST00000405925 PPM1DO15297 605 aa8.55□□□□□ -1.04
LIG4-202ENST00000405925 ZNF749O43361 778 aa8.55□□□□□ -1.04
LIG4-202ENST00000405925 CPNE3O75131 537 aaKnown RBP8.55□□□□□ -1.04
LIG4-202ENST00000405925 CELA2BP08218 269 aaPredicted RBP8.55□□□□□ -1.04
LIG4-202ENST00000405925 ACVR2AP27037 513 aa8.55□□□□□ -1.04
LIG4-202ENST00000405925 CPOXP36551 454 aa8.55□□□□□ -1.04
LIG4-202ENST00000405925 ADGRG5Q8IZF4 528 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms