RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GLYR1Q49A26 553 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SLC25A53Q5H9E4 307 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF551Q7Z340 670 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NUP54Q7Z3B4 507 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 MYLK4Q86YV6 388 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 GRAMD2AQ8IUY3 354 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SLC34A3Q8N130 599 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF321PQ8N8H1 164 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 FADS6Q8N9I5 356 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 OR9A2Q8NGT5 310 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SPDL1Q96EA4 605 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 LCORQ96JN0 433 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TSSK3Q96PN8 268 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ANGPTL4Q9BY76 406 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 RMND5AQ9H871 391 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 QPCTLQ9NXS2 382 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 MARCOQ9UEW3 520 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CHCHD2Q9Y6H1 151 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SCN3AQ9NY46 2000 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 HRKO00198 91 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 PEX12O00623 359 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 FCHO1O14526 889 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 DIAPH2O60879 1101 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NEURL1O76050 574 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 T-ENOLP0DO92 83 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NID1P14543 1247 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CD1EP15812 388 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 POLE2P56282 527 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 RBBP4Q09028 425 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ADRM1Q16186 407 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TRMT12Q53H54 448 aaKnown RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC157Q569K6 752 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 BHLHB9Q6PI77 547 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TREML1Q86YW5 311 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 POGLUT1Q8NBL1 392 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 EXOSC3Q9NQT5 275 aaKnown RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM181Q9P2C4 612 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CD300AQ9UGN4 299 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 PIEZO1Q92508 2521 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 PRAMEF27A3QJZ7 478 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 KIAA0513O60268 411 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NME2P1O60361 137 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 KITP10721 976 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NME2P22392 152 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 S100A3P33764 101 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CDKN2CP42773 168 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NCBP2P52298 156 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 STX4Q12846 297 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 KCNAB2Q13303 367 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TUBA3CQ13748 450 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF750Q32MQ0 723 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 FAM174BQ3ZCQ3 159 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 NHSL2Q5HYW2 709 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 PAGE3Q5JUK9 113 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TBCELQ5QJ74 424 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 IRAK1BP1Q5VVH5 260 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 OR4F3Q6IEY1 312 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TUBA3EQ6PEY2 450 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 PTRH1Q86Y79 214 aaKnown RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 EXD3Q8N9H8 876 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 DIO2Q92813 273 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TRNT1Q96Q11 434 aaKnown RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 HOPXQ9BPY8 73 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF160Q9HCG1 818 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 MIEF1Q9NQG6 463 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SLC6A13Q9NSD5 602 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CNIH4Q9P003 139 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 HNRNPCL1O60812 293 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 PPM1BO75688 479 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 TFPTP0C1Z6 253 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 PRR5P85299 388 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 LTB4RQ15722 352 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 TRMT5Q32P41 509 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ISLR2Q6UXK2 745 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RNF111Q6ZNA4 994 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 CMIPQ8IY22 773 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RBMXL3Q8N7X1 1067 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 VPS37AQ8NEZ2 397 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 OR52R1Q8NGF1 315 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ARSGQ96EG1 525 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 SGCZQ96LD1 299 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ANKRD27Q96NW4 1050 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RASL10BQ96S79 203 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ZBTB18Q99592 522 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ING2Q9H160 280 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 KAT8Q9H7Z6 458 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 C3orf14Q9HBI5 128 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 DTX4Q9Y2E6 619 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 GON4LQ3T8J9 2241 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 FAM220BPB1ANY3 271 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM229AB2RXF0 380 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 HMGN4O00479 90 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF354AO60765 605 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 NTN1O95631 604 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 C6orf47O95873 294 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 SEMG1P04279 462 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 VIMP08670 466 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 TBXA2RP21731 343 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 EFR3AQ14156 821 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 LACTB2Q53H82 288 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms