RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TMBIM6P55061 237 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 LPAL2Q16609 132 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ATAD3BQ5T9A4 648 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 TNFAIP8L2Q6P589 184 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 KRT73Q86Y46 540 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 CHDHQ8NE62 594 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 PIK3C3Q8NEB9 887 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 IFI44Q8TCB0 444 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MAL2Q969L2 176 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 COL26A1Q96A83 441 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF607Q96SK3 696 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 SPATA5L1Q9BVQ7 753 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 SPRTNQ9H040 489 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 SOX17Q9H6I2 414 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 CALML5Q9NZT1 146 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 NTMQ9P121 344 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 TMEFF2Q9UIK5 374 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 LIPT1Q9Y234 373 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MAGED1Q9Y5V3 778 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 U3KQA8 63 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ARID1BQ8NFD5 2236 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 A0A087WV62 115 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 SYNDIG1LA6NDD5 238 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 WASHC1A8K0Z3 465 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 A8MU76 341 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 OR10H2O60403 315 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 CTNSO60931 367 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 SLC35E2P0CK97 266 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 EEF1B2P24534 225 aaKnown RBP17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 MC3RP41968 323 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 IST1P53990 364 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 PRKAG1P54619 331 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 CXCR4P61073 352 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 CCL7P80098 99 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 STX4Q12846 297 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 RAB39AQ14964 217 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 GPR19Q15760 415 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 CRB2Q5IJ48 1285 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 PERM1Q5SV97 790 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 PRAMEF8Q5VWM4 474 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 PRAMEF7Q5VXH5 474 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 LAIR1Q6GTX8 287 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 HORMAD2Q8N7B1 307 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 OR13F1Q8NGS4 319 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF675Q8TD23 568 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 EPYCQ99645 322 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 ACTRT3Q9BYD9 372 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 OR51I1Q9H343 314 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 TRIM45Q9H8W5 580 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 HCN3Q9P1Z3 774 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 PADI2Q9Y2J8 665 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 KMT2EQ8IZD2 1858 aa17.06■□□□□ 0.32
CCDC88C-203ENST00000389856 M0QX08 132 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 DLL1O00548 723 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 BCKDKO14874 412 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 C1QCP02747 245 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 HMGN2P05204 90 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 NT5EP21589 574 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 HSD17B7P56937 341 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 ISL1P61371 349 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 EEF1A2Q05639 463 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 SLC13A2Q13183 592 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 PMS2P3Q13401 168 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 KCNAB1Q14722 419 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF750Q32MQ0 723 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 AP1ARQ63HQ0 302 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 KDM4DQ6B0I6 523 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 ZCCHC12Q6PEW1 402 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 TMEM179BQ7Z7N9 219 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 LGI4Q8N135 537 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 HSH2DQ96JZ2 352 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 OR1F2PQ96R84 312 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 DOHHQ9BU89 302 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 SYNDIG1Q9H7V2 258 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 REEP1Q9H902 201 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 PRTFDC1Q9NRG1 225 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 FGF21Q9NSA1 209 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 EXD2Q9NVH0 621 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 NDOR1Q9UHB4 597 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 PCDHGA8Q9Y5G5 932 aa17.05■□□□□ 0.32
CCDC88C-203ENST00000389856 HMGN4O00479 90 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 DSCR3O14972 297 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 FLRT2O43155 660 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SLC28A2O43868 658 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 FGF17O60258 216 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 JRKO75564 520 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SERPINB7O75635 380 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SEC14L2O76054 403 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 TFPTP0C1Z6 253 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 NR2F1P10589 423 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 PCSK6P29122 969 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 CRISP3P54108 245 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 CASP9P55211 416 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SELENOWP63302 87 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 TRA2AQ13595 282 aaKnown RBP eCLIP17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SERTAD2Q14140 314 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 OR4N5Q8IXE1 308 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 OR2L13Q8N349 312 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 OR1L3Q8NH93 324 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 BBS10Q8TAM1 723 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms