RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 RAB11FIP2Q7L804 512 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 OLIG3Q7RTU3 272 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 SLC35A4Q96G79 324 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 TPD52L3Q96J77 140 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 PELOQ9BRX2 385 aaKnown RBP25.02■■□□□ 1.6
MSX1-201ENST00000382723 CHID1Q9BWS9 393 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 TGIF2Q9GZN2 237 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 AKIRIN1Q9H9L7 192 aaPredicted RBP25.02■■□□□ 1.6
MSX1-201ENST00000382723 PMS2P1A4D2B8 440 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 M0QX08 132 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 DUSP8Q13202 625 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 MLIPQ5VWP3 458 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 CBLL1Q75N03 491 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 CCDC80Q76M96 950 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 TMEM151BQ8IW70 566 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 PAPD5Q8NDF8 572 aaKnown RBP25.02■■□□□ 1.6
MSX1-201ENST00000382723 SEMA6AQ9H2E6 1030 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 SOX17Q9H6I2 414 aaPredicted RBP25.02■■□□□ 1.6
MSX1-201ENST00000382723 ZNF639Q9UID6 485 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 RIMS3Q9UJD0 308 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 ERVK-19Q9WJR5 959 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 C17orf105B2RV13 164 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 TMX2-CTNND1H3BSU7 103 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 HNRNPRO43390 633 aaKnown RBP25.01■■□□□ 1.59
MSX1-201ENST00000382723 PGM3O95394 542 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 RECKO95980 971 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 IFI6P09912 130 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 RAP2AP10114 183 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 CLCN2P51788 898 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 PCBP3P57721 371 aaKnown RBP25.01■■□□□ 1.59
MSX1-201ENST00000382723 FUT5Q11128 374 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 GPAT3Q53EU6 434 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 FAAH2Q6GMR7 532 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 EIF3MQ7L2H7 374 aaKnown RBP25.01■■□□□ 1.59
MSX1-201ENST00000382723 OVCH1Q7RTY7 1134 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 VTCN1Q7Z7D3 282 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 AMIGO2Q86SJ2 522 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 SLCO6A1Q86UG4 719 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 TAMM41Q96BW9 452 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 ADPRHL2Q9NX46 363 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 B3GALT1Q9Y5Z6 326 aa25.01■■□□□ 1.59
MSX1-201ENST00000382723 IGLV3-12A0A075B6K2 115 aa25■■□□□ 1.59
MSX1-201ENST00000382723 ASNA1O43681 348 aa25■■□□□ 1.59
MSX1-201ENST00000382723 ACP2P11117 423 aa25■■□□□ 1.59
MSX1-201ENST00000382723 AGXTP21549 392 aa25■■□□□ 1.59
MSX1-201ENST00000382723 TRIP10Q15642 601 aa25■■□□□ 1.59
MSX1-201ENST00000382723 DUSP5Q16690 384 aa25■■□□□ 1.59
MSX1-201ENST00000382723 ATAD3BQ5T9A4 648 aa25■■□□□ 1.59
MSX1-201ENST00000382723 HES3Q5TGS1 186 aa25■■□□□ 1.59
MSX1-201ENST00000382723 IRAK1BP1Q5VVH5 260 aa25■■□□□ 1.59
MSX1-201ENST00000382723 CDS1Q92903 461 aa25■■□□□ 1.59
MSX1-201ENST00000382723 HSH2DQ96JZ2 352 aa25■■□□□ 1.59
MSX1-201ENST00000382723 PISDQ9UG56 409 aa25■■□□□ 1.59
MSX1-201ENST00000382723 TCRBV16S1A1N1A0A5B0 115 aa25■■□□□ 1.59
MSX1-201ENST00000382723 DUXAA6NLW8 204 aa25■■□□□ 1.59
MSX1-201ENST00000382723 COQ9O75208 318 aa25■■□□□ 1.59
MSX1-201ENST00000382723 TXNL4AP83876 142 aaKnown RBP25■■□□□ 1.59
MSX1-201ENST00000382723 EP300Q09472 2414 aaPredicted RBP25■■□□□ 1.59
MSX1-201ENST00000382723 ZNF155Q12901 538 aaPredicted RBP25■■□□□ 1.59
MSX1-201ENST00000382723 LRRC36Q1X8D7 754 aa25■■□□□ 1.59
MSX1-201ENST00000382723 DCAF12Q5T6F0 453 aa25■■□□□ 1.59
MSX1-201ENST00000382723 FKBP9P1Q75LS8 142 aa25■■□□□ 1.59
MSX1-201ENST00000382723 C16orf62Q7Z3J2 963 aa25■■□□□ 1.59
MSX1-201ENST00000382723 PTPMT1Q8WUK0 201 aaPredicted RBP25■■□□□ 1.59
MSX1-201ENST00000382723 TREX2Q9BQ50 279 aaPredicted RBP25■■□□□ 1.59
MSX1-201ENST00000382723 TACO1Q9BSH4 297 aaKnown RBP25■■□□□ 1.59
MSX1-201ENST00000382723 RUBCNLQ9H714 662 aa25■■□□□ 1.59
MSX1-201ENST00000382723 CUL9Q8IWT3 2517 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 MUC6Q6W4X9 2439 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 FAM149AA5PLN7 773 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 SUV39H1O43463 412 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 CHRM4P08173 479 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 JMJD7P0C870 316 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 CRB2Q5IJ48 1285 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 LPCAT4Q643R3 524 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 HMBOX1Q6NT76 420 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 FAM199XQ6PEV8 388 aaPredicted RBP24.99■■□□□ 1.59
MSX1-201ENST00000382723 ERMP1Q7Z2K6 904 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 GLRX5Q86SX6 157 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 PATL1Q86TB9 770 aaKnown RBP24.99■■□□□ 1.59
MSX1-201ENST00000382723 TMEM102Q8N9M5 508 aaPredicted RBP24.99■■□□□ 1.59
MSX1-201ENST00000382723 CDRT4Q8N9R6 151 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 SMYD1Q8NB12 490 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 DEPDC7Q96QD5 511 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 C14orf105Q9NVL8 296 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 FER1L5A0AVI2 2057 aa24.99■■□□□ 1.59
MSX1-201ENST00000382723 TEX51A0A1B0GUA7 166 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 ONECUT2O95948 504 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 KLK3P07288 261 aaPredicted RBP24.98■■□□□ 1.59
MSX1-201ENST00000382723 HEXBP07686 556 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 ALOX5P09917 674 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 FASP25445 335 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 GALNSP34059 522 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 CRISP3P54108 245 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 LANCL3Q6ZV70 420 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 LIN37Q96GY3 246 aaPredicted RBP24.98■■□□□ 1.59
MSX1-201ENST00000382723 PHOX2BQ99453 314 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 EXD2Q9NVH0 621 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 CLCA3PQ9Y6N3 262 aa24.98■■□□□ 1.59
MSX1-201ENST00000382723 H6PDO95479 791 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms