RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 WSCD1Q658N2 575 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ADAM5Q6NVV9 412 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TMPRSS11FQ6ZWK6 438 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ABHD13Q7L211 337 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 GPR135Q8IZ08 494 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ADAMTS16Q8TE57 1224 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SLC35C1Q96A29 364 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 KCTD12Q96CX2 325 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 GAL3ST4Q96RP7 486 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 BABAM2Q9NXR7 383 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 GRIN2AQ12879 1464 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 POM121CA8CG34 1229 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 STC2O76061 302 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 GSRP00390 522 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 DTYMKP23919 212 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 DEFB106AQ8N104 65 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ZNF587Q96SQ5 575 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 ARHGAP39Q9C0H5 1083 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 DBNDD1Q9H9R9 158 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PDE7BQ9NP56 450 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 KCNG2Q9UJ96 466 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 KIAA0100Q14667 2235 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 RAB40ALP0C0E4 278 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 NPRL3Q12980 569 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SLC36A3Q495N2 470 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 LPCAT3Q6P1A2 487 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 NPNTQ6UXI9 565 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 RAB40AQ8WXH6 277 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 NKD2Q969F2 451 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 ADGRG7Q96K78 797 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PGLYRP2Q96PD5 576 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ANKRD60Q9BZ19 345 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 TBL1XR1Q9BZK7 514 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 DNAJC5Q9H3Z4 198 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 RAB18Q9NP72 206 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ATP13A2Q9NQ11 1180 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SLC39A9Q9NUM3 307 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SETD1AO15047 1707 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 ASXL3Q9C0F0 2248 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ANKRD28O15084 1053 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SLC25A27O95847 323 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 USP17L7P0C7H9 530 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ELFN1P0C7U0 828 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 C6P13671 934 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SLC5A2P31639 672 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 HMGCS1Q01581 520 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 TTC32Q5I0X7 151 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SFRP4Q6FHJ7 346 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 OTOP3Q7RTS5 596 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 NRKQ7Z2Y5 1582 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 KLHDC8BQ8IXV7 354 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 OR4F6Q8NGB9 312 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SCLYQ96I15 445 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 EBPLQ9BY08 206 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 FBXW2Q9UKT8 454 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ACTL7AQ9Y615 435 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 OR2T1O43869 369 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SLC2A1P11166 492 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 CBR1P16152 277 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PTNP21246 168 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PRDX3P30048 256 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 SREBF1P36956 1147 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PCP4P48539 62 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 BDH1Q02338 343 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ALKAL2Q6UX46 152 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 NDUFAF7Q7L592 441 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 LMNTD1Q8N9Z9 388 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 UBAC2Q8NBM4 344 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 CHST13Q8NET6 341 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ELF4Q99607 663 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 P2RY13Q9BPV8 354 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 FAM124BQ9H5Z6 455 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 ING1Q9UK53 422 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 GPSM3Q9Y4H4 160 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PCDH7O60245 1069 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ESR1P03372 595 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 HOXD11P31277 338 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 NUMBP49757 651 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 TAP2Q03519 686 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 MBOAT1Q6ZNC8 495 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PLD6Q8N2A8 252 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 IL17REQ8NFR9 667 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 JOSD2Q8TAC2 188 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 BRIX1Q8TDN6 353 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 RAB8BQ92930 207 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 RGMAQ96B86 450 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 ISYNA1Q9NPH2 558 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PIGVQ9NUD9 493 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 BIVM-ERCC5R4GMW8 1640 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 C17orf102A2RUQ5 167 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 CNOT4O95628 575 aaKnown RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 IL1BP01584 269 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 AK4P27144 223 aaPredicted RBP8.36□□□□□ -1.07
LIG3-202ENST00000378526 NKX3-2P78367 333 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 CEACAM20Q6UY09 585 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 OR6V1Q8N148 313 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 FAM213BQ8TBF2 198 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 PDCD1LG2Q9BQ51 273 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 SEC61A2Q9H9S3 476 aa8.36□□□□□ -1.07
LIG3-202ENST00000378526 RAI2Q9Y5P3 530 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms