RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 LRRTM3Q86VH5 581 aa17.54■□□□□ 0.4
SMPD1-201ENST00000342245 OR5M9Q8NGP3 310 aa17.54■□□□□ 0.4
SMPD1-201ENST00000342245 UPF1Q92900 1129 aaKnown RBP eCLIP17.54■□□□□ 0.4
SMPD1-201ENST00000342245 SLC32A1Q9H598 525 aa17.54■□□□□ 0.4
SMPD1-201ENST00000342245 HMX1Q9NP08 348 aaPredicted RBP17.54■□□□□ 0.4
SMPD1-201ENST00000342245 GSN-AS1Q9NRJ2 163 aa17.54■□□□□ 0.4
SMPD1-201ENST00000342245 TMEM82A0PJX8 343 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 TRABD2BA6NFA1 517 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 PRRG1O14668 218 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 TREHO43280 583 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 NBNO60934 754 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 KDM4BO94953 1096 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 MOCS2O96007 188 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 FEN1P39748 380 aaKnown RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 CDC42EP1Q00587 391 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 IDNKQ5T6J7 187 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 OR2G6Q5TZ20 316 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 DEF8Q6ZN54 512 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 NPAS3Q8IXF0 933 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 TCEAL3Q969E4 200 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ZNF582Q96NG8 517 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 IFT27Q9BW83 186 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 APOL5Q9BWW9 433 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 DPP7Q9UHL4 492 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 TLX2O43763 284 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 PCDH7O60245 1069 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 HPP00738 406 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 S100A9P06702 114 aaKnown RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 GABRA1P14867 456 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 CPN1P15169 458 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 RAB3BP20337 219 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 AKAP5P24588 427 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 CAPZA2P47755 286 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 SOX4Q06945 474 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 GANABQ14697 944 aaKnown RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ZNF630Q2M218 657 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ZNF528Q3MIS6 628 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 CAMKMTQ7Z624 323 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ZNF687Q8N1G0 1237 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ZNF527Q8NB42 609 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 ARRDC4Q8NCT1 418 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 EMID1Q96A84 441 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 MS4A3Q96HJ5 214 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 POLR2J3Q9H1A7 115 aaKnown RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 NPDC1Q9NQX5 325 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-201ENST00000342245 OR6C2Q9NZP2 312 aa17.53■□□□□ 0.4
SMPD1-201ENST00000342245 A0A0G2JPF8 293 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 HNRNPCL3B7ZW38 293 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 HNRNPCL4P0DMR1 293 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 RFC3P40938 356 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 CRATP43155 626 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 ASMTP46597 345 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 MC2RQ01718 297 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 SERINC3Q13530 473 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 SEC23BQ15437 767 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 SMAD2Q15796 467 aaKnown RBP17.52■□□□□ 0.4
SMPD1-201ENST00000342245 CPTPQ5TA50 214 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 ALKAL2Q6UX46 152 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 BAIAP2L2Q6UXY1 529 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 CERS6Q6ZMG9 384 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 HJURPQ8NCD3 748 aaPredicted RBP17.52■□□□□ 0.4
SMPD1-201ENST00000342245 WDR20Q8TBZ3 569 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 C11orf24Q96F05 449 aaPredicted RBP17.52■□□□□ 0.4
SMPD1-201ENST00000342245 BCL2L14Q9BZR8 327 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 GOLGA2P5Q9HBQ8 144 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 TVP23BQ9NYZ1 205 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 FKBPLQ9UIM3 349 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 CA5BQ9Y2D0 317 aa17.52■□□□□ 0.4
SMPD1-201ENST00000342245 KCNE1BA0A087WTH5 132 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 A0A1B0GUH1 482 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 AGAP14A8MT82 685 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 PRR23D1E9PI22 279 aaPredicted RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 EIF1BO60739 113 aaKnown RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 RAMP2O60895 175 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 SC5DO75845 299 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 ZNF865P0CJ78 1059 aaPredicted RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 PRR23D2P0DMB1 279 aaPredicted RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 MAPK3P27361 379 aaPredicted RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 HNF1BP35680 557 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 EIF1P41567 113 aaKnown RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 DGKGP49619 791 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 MMP15P51511 669 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 YBEYP58557 167 aaPredicted RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 MBTPS1Q14703 1052 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 UBXN2BQ14CS0 331 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 NDUFA9Q16795 377 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 ZSWIM7Q19AV6 140 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 DCST1Q5T197 706 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 FAM69AQ5T7M9 428 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 PTRHD1Q6GMV3 140 aaKnown RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 LRRC70Q7Z2Q7 622 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 TSPAN33Q86UF1 283 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 SIAH3Q8IW03 269 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 OXR1Q8N573 874 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 SFT2D1Q8WV19 159 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 MTG2Q9H4K7 406 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 ERVK-19Q9WJR5 959 aa17.52■□□□□ 0.39
SMPD1-201ENST00000342245 RUVBL1Q9Y265 456 aaKnown RBP17.52■□□□□ 0.39
SMPD1-201ENST00000342245 SCAMP2O15127 329 aaKnown RBP17.51■□□□□ 0.39
SMPD1-201ENST00000342245 ADAM12O43184 909 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms