RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NDUFV2P19404 249 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 RORAP35398 523 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 BDH1Q02338 343 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 AAK1Q2M2I8 961 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 C3orf38Q5JPI3 329 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 HS3ST5Q8IZT8 346 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 PACRGLQ8N7B6 248 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 OR51T1Q8NGJ9 327 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 HUS1BQ8NHY5 278 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 MYRFLQ96LU7 910 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 COL3A1P02461 1466 aaPredicted RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 MEIS3P1A6NDR6 274 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 F5H5K5 113 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 CHRNB1P11230 501 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 RFC2P35250 354 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 ARSFP54793 590 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 NTHL1P78549 312 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 DHCR24Q15392 516 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 LARP4Q71RC2 724 aaKnown RBP eCLIP12.02□□□□□ -0.49
SDC3-201ENST00000336798 PLEKHO2Q8TD55 490 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 RHBDD1Q8TEB9 315 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 TOMM40LQ969M1 308 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 MRGPRX2Q96LB1 330 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 CNN2Q99439 309 aaKnown RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 C7orf50Q9BRJ6 194 aaKnown RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 ST6GALNAC5Q9BVH7 336 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 PIAS3Q9Y6X2 628 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 OR6C6A6NF89 314 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 HTRA2O43464 458 aaPredicted RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 SCGB2A1O75556 95 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 RAB4AP20338 218 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 ZNF136P52737 540 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 RPS15AP62244 130 aaKnown RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 CST6Q15828 149 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 SYT14Q8NB59 555 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 NPY6RQ99463 290 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 B3GNT2Q9NY97 397 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 C1orf226A1L170 272 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 HHLA1C9JL84 531 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 NUDT21O43809 227 aaKnown RBP12.02□□□□□ -0.49
SDC3-201ENST00000336798 ETFAP13804 333 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 EPHA4P54764 986 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 DOC2AQ14183 400 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 ENPP6Q6UWR7 440 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 ZDHHC14Q8IZN3 488 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 BEST3Q8N1M1 668 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 FAM46BQ96A09 425 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 LRR1Q96L50 414 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 ARPC5LQ9BPX5 153 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 PCTPQ9UKL6 214 aa12.02□□□□□ -0.49
SDC3-201ENST00000336798 NPIPA5A0A0B4J1W7 369 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 ARGFXA6NJG6 315 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 NPIPA7E9PJI5 369 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PMM2O15305 246 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 SNAI1O95863 264 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 SLC16A8O95907 504 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 LCATP04180 440 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 NPIPA8P0DM63 369 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PTH2RP49190 550 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ARG2P78540 354 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 KCNAB2Q13303 367 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 CLCA4Q14CN2 919 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ARL5BQ96KC2 179 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 HHIPQ96QV1 700 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PHOX2BQ99453 314 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 MACROD1Q9BQ69 325 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 SEZ6LQ9BYH1 1024 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 MTG2Q9H4K7 406 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 FAIMQ9NVQ4 179 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 SIX4Q9UIU6 781 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 FAM155AB1AL88 458 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 FTCDNL1E5RQL4 147 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 NFKBIEO00221 500 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PNMTP11086 282 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 TMEM11P17152 192 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 IL4RP24394 825 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PITPNBP48739 271 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 CAMLGP49069 296 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 FAM189BP81408 668 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 NXPE4Q6UWF7 544 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 UEVLDQ8IX04 471 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 SNIP1Q8TAD8 396 aaKnown RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 FRS2Q8WU20 508 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ARHGAP39Q9C0H5 1083 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 SEC14L4Q9UDX3 406 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 CRTAPO75718 401 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 CTXN1P60606 82 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 RAB5BP61020 215 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 C9orf135Q5VTT2 229 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PGM2L1Q6PCE3 622 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ZNF367Q7RTV3 350 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 OR56B2PQ8NGI1 322 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 CIDECQ96AQ7 238 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 RRNAD1Q96FB5 475 aaKnown RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 DCBLD2Q96PD2 775 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ARL6Q9H0F7 186 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 MARCH4Q9P2E8 410 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 RAB11BQ15907 218 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 PLEKHN1Q494U1 663 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms