RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LNX2Q8N448 690 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 OR52N2Q8NGI0 321 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 BSCL2Q96G97 398 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PELI2Q9HAT8 420 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ENAMQ9NRM1 1142 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ICKQ9UPZ9 632 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ABCA3Q99758 1704 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ADAMTSL3P82987 1691 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 STMND1H3BQB6 276 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PRKACBP22694 351 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 MPIP34949 423 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 HTR2BP41595 481 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 GALEQ14376 348 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DSC3Q14574 896 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PEA15Q15121 130 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SSX2Q16385 188 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 XKR6Q5GH73 641 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PLEKHH3Q7Z736 793 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CACUL1Q86Y37 369 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF283Q8N7M2 679 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 UTP4Q969X6 686 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 LRCH3Q96II8 777 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PTCHD1Q96NR3 888 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CD180Q99467 661 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM175Q9BSA9 504 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM38AQ9H6F2 299 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZFP14Q9HCL3 533 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 HACL1Q9UJ83 578 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DIMT1Q9UNQ2 313 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 C1RP00736 705 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 IFNA5P01569 189 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 MMP10P09238 476 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF155Q12901 538 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SCARB2Q14108 478 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM31Q5JXX7 168 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM205Q6UW68 189 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DCAF4L2Q8NA75 395 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 OR8J2Q8NGG1 315 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SCARB1Q8WTV0 552 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ASB17Q8WXJ9 295 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 MSI2Q96DH6 328 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SLC35G5Q96KT7 338 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FERD3LQ96RJ6 166 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SEC22CQ9BRL7 303 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 RGCCQ9H4X1 137 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ADARB2Q9NS39 739 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CBLCQ9ULV8 474 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 COPS3Q9UNS2 423 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SLC7A11Q9UPY5 501 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 OR51F1A6NGY5 319 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ISM1B1AKI9 464 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 J3QR89 54 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FMO6PO60774 539 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CAPNS1P04632 268 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 F2RP25116 425 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CALCRP30988 508 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 MLLT1Q03111 559 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CBX2Q14781 532 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PRAMEF13Q5VWM6 474 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 NCBP2-AS2Q69YL0 99 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF627Q7L945 461 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ADGRA1Q86SQ6 560 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SLC51AQ86UW1 340 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 KDF1Q8NAX2 398 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 NAXEQ8NCW5 288 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ATG4CQ96DT6 458 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZDHHC6Q9H6R6 413 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF286AQ9HBT8 521 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CD300AQ9UGN4 299 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 A8MUI8 341 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TBX19O60806 448 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ALPPP05187 535 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SDHBP21912 280 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CDH8P55286 799 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SF1Q15637 639 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CYBRD1Q53TN4 286 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PSMG4Q5JS54 123 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DET1Q7L5Y6 550 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PAQR7Q86WK9 346 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF366Q8N895 744 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SLAMF9Q96A28 289 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FGGYQ96C11 551 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DAZAP1Q96EP5 407 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CASD1Q96PB1 797 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CACNG6Q9BXT2 260 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 C8orf33Q9H7E9 229 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 RLIMQ9NVW2 624 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 IL20RAQ9UHF4 553 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TFR2Q9UP52 801 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 NUDT21O43809 227 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SLC22A5O76082 557 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ABHD16AO95870 558 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CALCBP10092 127 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 INSRRP14616 1297 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TNFSF4P23510 183 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FGF9P31371 208 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 HTR3AP46098 478 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PRPS1P60891 318 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SHC2P98077 582 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 GPR19Q15760 415 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms