RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 FAM227AF5H4B4 570 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 I3L1I5 382 aaPredicted RBP13.37□□□□□ -0.27
C9orf3-202ENST00000297979 DNAJB5O75953 348 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 ZBTB11O95625 1053 aaPredicted RBP13.37□□□□□ -0.27
C9orf3-202ENST00000297979 GPR75O95800 540 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 IFNW1P05000 195 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 UBL4AP11441 157 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 GLB1P16278 677 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 FUT5Q11128 374 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 NIPAL1Q6NVV3 410 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 LURAP1LQ8IV03 231 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 OR2L13Q8N349 312 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 ZNF555Q8NEP9 628 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 PROX1Q92786 737 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 AMBRA1Q9C0C7 1298 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 FAM118AQ9NWS6 357 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 SEC14L3Q9UDX4 400 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 SUSD2Q9UGT4 822 aa13.37□□□□□ -0.27
C9orf3-202ENST00000297979 H3BNH8 94 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 CHST10O43529 356 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 DUX1O43812 170 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 RECKO95980 971 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 ATP1B1P05026 303 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 CHRM4P08173 479 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 XCR1P46094 333 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 MAN2A2P49641 1150 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 SPIBQ01892 262 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 KCNAB2Q13303 367 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 ZNF628Q5EBL2 1059 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 TTC33Q6PID6 262 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-202ENST00000297979 GPR32P1Q8NGA4 272 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 APOBEC4Q8WW27 367 aaKnown RBP13.36□□□□□ -0.27
C9orf3-202ENST00000297979 MRPS26Q9BYN8 205 aaKnown RBP13.36□□□□□ -0.27
C9orf3-202ENST00000297979 KIF17Q9P2E2 1029 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 LYVE1Q9Y5Y7 322 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 ENPP4Q9Y6X5 453 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 TNFRSF11BO00300 401 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 MED26O95402 600 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 GPR3P46089 330 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 KCNJ5P48544 419 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 DAPP51397 102 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 FAM53BQ14153 422 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 INAQ16352 499 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 GPAT3Q53EU6 434 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 TCTE1Q5JU00 501 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 GARNL3Q5VVW2 1013 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 PRAMEF8Q5VWM4 474 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 PRAMEF7Q5VXH5 474 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 KDM4DQ6B0I6 523 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 MFSD12Q6NUT3 480 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 C16orf54Q6UWD8 224 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 CYP4Z1Q86W10 505 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 APLFQ8IW19 511 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-202ENST00000297979 CARFQ8N187 725 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 GALNT6Q8NCL4 622 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 TSC22D3Q99576 134 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 PIP5K1AQ99755 562 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 BTBD2Q9BX70 525 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 PFDN2Q9UHV9 154 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 PILRBQ9UKJ0 227 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 ITGB1BP2Q9UKP3 347 aa13.36□□□□□ -0.27
C9orf3-202ENST00000297979 FAM32AQ9Y421 112 aaKnown RBP13.36□□□□□ -0.27
C9orf3-202ENST00000297979 HYKKA2RU49 373 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 FOXS1O43638 330 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 SEC24DO94855 1032 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 SLITRK5O94991 958 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ETS2P15036 469 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 PIGAP37287 484 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 YAP1P46937 504 aaKnown RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 PUM1Q14671 1186 aaKnown RBP eCLIP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ATAD3BQ5T9A4 648 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ZNF786Q8N393 782 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ZNF354BQ96LW1 612 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 MUS81Q96NY9 551 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 SPATA5L1Q9BVQ7 753 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 LIPT1Q9Y234 373 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 KCNE3Q9Y6H6 103 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 COL6A3P12111 3177 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 A0A0G2JPF8 293 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 HNRNPCL2B2RXH8 293 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 HNRNPCL3B7ZW38 293 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 NSA2O95478 260 aaKnown RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 HNRNPCL4P0DMR1 293 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 RNH1P13489 461 aaKnown RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 RHCEP18577 417 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 EPHA8P29322 1005 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 CDH12P55289 794 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 GPLD1P80108 840 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 CSTF1Q05048 431 aaKnown RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 APOFQ13790 326 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 NR1D2Q14995 579 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 AMZ1Q400G9 498 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 PLK5Q496M5 336 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ZNF362Q5T0B9 420 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-202ENST00000297979 CDC73Q6P1J9 531 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 FAHD1Q6P587 224 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 PLXDC1Q8IUK5 500 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ATG16L2Q8NAA4 619 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ADAMTS15Q8TE58 950 aa13.35□□□□□ -0.27
C9orf3-202ENST00000297979 ANKRD9Q96BM1 317 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms