RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TBCCD1Q9NVR7 557 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 NME4O00746 187 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 TSPAN4O14817 238 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 UBL4AP11441 157 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 IFNGR1P15260 489 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 FOLR3P41439 243 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 TNFRSF4P43489 277 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 KIR2DS3Q14952 304 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 PON2Q15165 354 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 PHOX2BQ99453 314 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 SACM1LQ9NTJ5 587 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 OR1A2Q9Y585 309 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 B8ZZF3 427 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 K7ERQ8 282 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 RGS9O75916 674 aaPredicted RBP18.21■□□□□ 0.51
UPF1-201ENST00000262803 ATE1O95260 518 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 CFL1P23528 166 aaKnown RBP18.21■□□□□ 0.51
UPF1-201ENST00000262803 PRPS1P60891 318 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 VASH1Q7L8A9 365 aaPredicted RBP18.21■□□□□ 0.51
UPF1-201ENST00000262803 CPXM2Q8N436 756 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 LGALS12Q96DT0 336 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 SLC12A9Q9BXP2 914 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 HPF1Q9NWY4 346 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 MYH7P12883 1935 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 GRXCR2A6NFK2 248 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 A8MVJ9 347 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 HK3P52790 923 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 AIMP2Q13155 320 aaKnown RBP18.21■□□□□ 0.51
UPF1-201ENST00000262803 OR52N2Q8NGI0 321 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 TANKQ92844 425 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 NANSQ9NR45 359 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 IGSF5Q9NSI5 407 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 HTR6P50406 440 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 ECH1Q13011 328 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 NR0B2Q15466 257 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 ENPP6Q6UWR7 440 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 CDH20Q9HBT6 801 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 VNN3Q9NY84 501 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 PRSS56P0CW18 603 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 MPP7Q5T2T1 576 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 LIPKQ5VXJ0 399 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 LCTLQ6UWM7 567 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 TMED4Q7Z7H5 227 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 UEVLDQ8IX04 471 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 DNAAF1Q8NEP3 725 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 C16orf58Q96GQ5 468 aa18.21■□□□□ 0.51
UPF1-201ENST00000262803 C13orf42A0A1B0GVH6 325 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 TGM5O43548 720 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 MRPS14O60783 128 aaKnown RBP18.2■□□□□ 0.5
UPF1-201ENST00000262803 NKX3-2P78367 333 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ZBTB8BQ8NAP8 495 aaPredicted RBP18.2■□□□□ 0.5
UPF1-201ENST00000262803 SLCO3A1Q9UIG8 710 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 C11orf98E9PRG8 122 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 GCGRP47871 477 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ARHGAP19Q14CB8 494 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 HMBOX1Q6NT76 420 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 MSANTD3Q96H12 275 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 KCNS2Q9ULS6 477 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 NENFQ9UMX5 172 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 TRAPPC13A5PLN9 417 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 APOL3O95236 402 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 GGT1P19440 569 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 HTR3AP46098 478 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 LRIT3Q3SXY7 679 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 UGT2A3Q6UWM9 527 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 BEND4Q6ZU67 534 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 LARP4Q71RC2 724 aaKnown RBP eCLIP18.2■□□□□ 0.5
UPF1-201ENST00000262803 SPTSSAQ969W0 71 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 MS4A4EQ96PG1 132 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 DNTTIP1Q9H147 329 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 C2orf42Q9NWW7 574 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 CENPBD1B2RD01 187 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 FOXE1O00358 373 aaPredicted RBP18.2■□□□□ 0.5
UPF1-201ENST00000262803 ITGB7P26010 798 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ERVPABLB-1P60509 514 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 MS4A2Q01362 244 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ODF4Q2M2E3 257 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ZNF789Q5FWF6 425 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 MGLLQ99685 303 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 TREM1Q9NP99 234 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 CA14Q9ULX7 337 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 ICKQ9UPZ9 632 aa18.2■□□□□ 0.5
UPF1-201ENST00000262803 FOSL2P15408 326 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CAPN3P20807 821 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CSNK1DP48730 415 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 TRA2BP62995 288 aaKnown RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 RTP2Q5QGT7 225 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SLC5A8Q8N695 610 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ARFGAP1Q8N6T3 406 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SPRYD4Q8WW59 207 aaPredicted RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 FARSAQ9Y285 508 aaKnown RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 ZNF175Q9Y473 711 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SPO11Q9Y5K1 396 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CHD2O14647 1828 aaKnown RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 GGT3PA6NGU5 568 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ZNF860A6NHJ4 632 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 STT3AP46977 705 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 NKAPLQ5M9Q1 402 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CDRT4Q8N9R6 151 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 MFSD8Q8NHS3 518 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms