RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 EFCAB7A8K855 629 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 EI24O14681 340 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PEX2P28328 305 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 RAB25P57735 213 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 TMEM150AQ86TG1 271 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 ABHD11Q8NFV4 315 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 HMGCLL1Q8TB92 370 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 TMEM80Q96HE8 168 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PRRC1Q96M27 445 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 DGCR6LQ9BY27 220 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 ERVMER34-1Q9H9K5 563 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PLGRKTQ9HBL7 147 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 NKIRAS2Q9NYR9 191 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PTPRFP10586 1907 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 FTCDNL1E5RQL4 147 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 LOC110117498-PIK3R3F6TDL0 507 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 GABRG2P18507 467 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 XCR1P46094 333 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 DAP3P51398 398 aaKnown RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 EMP3P54852 163 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PFN3P60673 137 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 XKR7Q5GH72 579 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 RABL3Q5HYI8 236 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 P2RY8Q86VZ1 359 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 OR52J3Q8NH60 311 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PIK3R3Q92569 461 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 WBP2Q969T9 261 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 YIPF4Q9BSR8 244 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 TMEM9BQ9NQ34 198 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PIGBOS1A0A0B4J2F0 54 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 NSA2O95478 260 aaKnown RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 RBPJQ06330 500 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 ZNF542PQ5EBM4 170 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 C6orf132Q5T0Z8 1188 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 TCEAL6Q6IPX3 200 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 GALNT5Q7Z7M9 940 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PNLDC1Q8NA58 520 aaKnown RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 RNF31Q96EP0 1072 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 CDX2Q99626 313 aaPredicted RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 UBQLN4Q9NRR5 601 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 C9JVG2 144 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 ANHXE9PGG2 379 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 NPIPA2E9PIF3 369 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 NPIPA3F8WFD2 350 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 CYP4B1P13584 511 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 IL1RNP18510 177 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 CYP27C1Q4G0S4 372 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 BAHD1Q8TBE0 780 aaPredicted RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 GRHL3Q8TE85 626 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 C6orf62Q9GZU0 229 aaPredicted RBP12.9□□□□□ -0.34
LDLR-201ENST00000252444 KLHL25Q9H0H3 589 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 PCDHAC1Q9H158 963 aa12.9□□□□□ -0.34
LDLR-201ENST00000252444 HCRTR2O43614 444 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 SDC3O75056 442 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 GSTT2BP0CG30 244 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ARAFP10398 606 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 FNTBP49356 437 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ENKURQ8TC29 256 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ORAI3Q9BRQ5 295 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 TMEM38AQ9H6F2 299 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 GXYLT2A0PJZ3 443 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 FAM53BQ14153 422 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 LAIR1Q6GTX8 287 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 WDR5BQ86VZ2 330 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 TREML1Q86YW5 311 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 FAR1Q8WVX9 515 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 MNTQ99583 582 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 C11orf16Q9NQ32 467 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 GIN1Q9NXP7 522 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 CBLCQ9ULV8 474 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 OAZ3Q9UMX2 235 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 PCDHGA8Q9Y5G5 932 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 PCDHGA7Q9Y5G6 932 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 PGM3O95394 542 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 MELKQ14680 651 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 BAIAP2L2Q6UXY1 529 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 USP53Q70EK8 1073 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 PDSS2Q86YH6 399 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 LKAAEAR1Q8TD35 194 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ZNF395Q9H8N7 513 aaPredicted RBP12.89□□□□□ -0.35
LDLR-201ENST00000252444 EBF2Q9HAK2 575 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 DOCK5Q9H7D0 1870 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 DSCR3O14972 297 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ZNF749O43361 778 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 RDH16O75452 317 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 ZNF28P17035 718 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 PLP2Q04941 152 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 DCST2Q5T1A1 773 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 TSSK6Q9BXA6 273 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 POLDIP3Q9BY77 421 aaKnown RBP12.89□□□□□ -0.35
LDLR-201ENST00000252444 CLEC4EQ9ULY5 219 aa12.89□□□□□ -0.35
LDLR-201ENST00000252444 A0A1B0GVT2 93 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 MT-ND5P03915 603 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ZNF12P17014 697 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ITGA3P26006 1051 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 SLC15A1P46059 708 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CLRN1P58418 232 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 DCTN2Q13561 401 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 ABHD17CQ6PCB6 329 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 MORN4Q8NDC4 146 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms