RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 GALNT11Q8NCW6 608 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 FAM46BQ96A09 425 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 UBQLN2Q9UHD9 624 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 HIF3AQ9Y2N7 669 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 DIRAS3O95661 229 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 RGS19P49795 217 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 ART1P52961 327 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CDNFQ49AH0 187 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 LRRC37A5PQ49AS3 106 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.9□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF551Q7Z340 670 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-201ENST00000215793 GALNT10Q86SR1 603 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 METTL25Q8N6Q8 603 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CHFRQ96EP1 664 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 LPAR4Q99677 370 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 BOCQ9BWV1 1114 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 MTG2Q9H4K7 406 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 PDLIM7Q9NR12 457 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 IGSF5Q9NSI5 407 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 RARRES3Q9UL19 164 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 SCML1Q9UN30 329 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CD8B2A6NJW9 211 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CD8BP10966 210 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 AMY2BP19961 511 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 VEZF1Q14119 521 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 NTRK2Q16620 822 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 RNASE10Q5GAN6 216 aaKnown RBP12.9□□□□□ -0.34
SF3A1-201ENST00000215793 SLC5A8Q8N695 610 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 OR52E2Q8NGJ4 325 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CD300LFQ8TDQ1 290 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 TP63Q9H3D4 680 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-201ENST00000215793 MEPEQ9NQ76 525 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-201ENST00000215793 ANKMY1Q9P2S6 941 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 MYOCOSA0A1B0GUC4 107 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 CIB4A0PJX0 185 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 THBS2P35442 1172 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 NKX3-2P78367 333 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 MALLQ13021 153 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 C6orf183Q5T699 404 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 TMEM25Q86YD3 366 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 TP53INP2Q8IXH6 220 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 IL22RA1Q8N6P7 574 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 FOXJ1Q92949 421 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 RHBDF1Q96CC6 855 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 HDHD5Q9BXW7 423 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 TAS2R3Q9NYW6 316 aa12.9□□□□□ -0.34
SF3A1-201ENST00000215793 NARSO43776 548 aaKnown RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 MRPS14O60783 128 aaKnown RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CD68P34810 354 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 ACTBP60709 375 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 ACTG1P63261 375 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CCINQ13939 588 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 COL28A1Q2UY09 1125 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RAET1LQ5VY80 246 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 SLC18B1Q6NT16 456 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 GDPGP1Q6ZNW5 385 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 TCEAL8Q8IYN2 117 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 THAP3Q8WTV1 239 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 JPH3Q8WXH2 748 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CACNG6Q9BXT2 260 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RICTORQ6R327 1708 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 MEGF11A6BM72 1044 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 E2F3O00716 465 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 TGM5O43548 720 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 IFNA5P01569 189 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CTSAP10619 480 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 IL1RNP18510 177 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RAB3BP20337 219 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 HTR2AP28223 471 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 BMPR1AP36894 532 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 PPP5CP53041 499 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 PROX2Q3B8N5 592 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 TMEM205Q6UW68 189 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 HMGN2P46Q86SG4 172 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 WDR20Q8TBZ3 569 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 HAVCR2Q8TDQ0 301 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 C17orf50Q8WW18 174 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 MSLNLQ96KJ4 702 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 ZBTB20Q9HC78 741 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 IL26Q9NPH9 171 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 PRAMEF2O60811 474 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CAPN3P20807 821 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 SHC2P98077 582 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 HHEXQ03014 270 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RGNQ15493 299 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 LARP4Q71RC2 724 aaKnown RBP eCLIP12.89□□□□□ -0.35
SF3A1-201ENST00000215793 OR4N5Q8IXE1 308 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 OR7G3Q8NG95 312 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 MFSD8Q8NHS3 518 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 FNDC8Q8TC99 324 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 TMEM40Q8WWA1 233 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 ZFYVE21Q9BQ24 234 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 GPR83Q9NYM4 423 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 BTNL2Q9UIR0 455 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 ENTPD2Q9Y5L3 495 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RFPL2O75678 378 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 IL7P13232 177 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 CNR2P34972 360 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 RABIFP47224 123 aa12.89□□□□□ -0.35
SF3A1-201ENST00000215793 SERTAD2Q14140 314 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms