RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MYH11P35749 1972 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 HCRTR2O43614 444 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TGFB1P01137 390 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR8U9P0C7N5 309 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 POU2F1P14859 743 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 IFNGR1P15260 489 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GPX3P22352 226 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 KCNJ5P48544 419 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SCAND1P57086 179 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FAM83HQ6ZRV2 1179 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CLEC14AQ86T13 490 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LURAP1LQ8IV03 231 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GPR156Q8NFN8 814 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR2A12Q8NGT7 310 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 XAGE5Q8WWM1 108 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TOLLIPQ9H0E2 274 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OSGEPL1Q9H4B0 414 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CWH43Q9H720 699 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 BCO1Q9HAY6 547 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MED9Q9NWA0 146 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 NDUFB11Q9NX14 153 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FBXO7Q9Y3I1 522 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PSEN2P49810 448 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 KDM4DQ6B0I6 523 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR5B17Q8NGF7 314 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR51L1Q8NGJ5 315 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR2L8Q8NGY9 312 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GIMAP1Q8WWP7 306 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 NOX3Q9HBY0 568 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MYOCOSA0A1B0GUC4 107 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 RPS10-NUDT3A0A1W2PQS6 291 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TLX3O43711 291 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF286BP0CG31 522 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 HTR2CP28335 458 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 RPS10P46783 165 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 UBAP2Q5T6F2 1119 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SHFQ7M4L6 423 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PTP4A1Q93096 173 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM18Q96B42 140 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CNN2Q99439 309 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TXN2Q99757 166 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 VAPAQ9P0L0 249 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LRFN1Q9P244 771 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 RPH3AQ9Y2J0 694 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PCDH7O60245 1069 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SPDEFO95238 335 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 AHSGP02765 367 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TCRBP04435 133 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 IL5P05113 134 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GIMD1P0DJR0 217 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CREB5Q02930 508 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 AAK1Q2M2I8 961 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PDSS1Q5T2R2 415 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MLIPQ5VWP3 458 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LILRA2Q8N149 483 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR9I1Q8NGQ6 314 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 C2orf15Q8WU43 125 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CPNE4Q96A23 557 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF354BQ96LW1 612 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 P2RX7Q99572 595 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FEVQ99581 238 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SYT17Q9BSW7 474 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 POLDIP3Q9BY77 421 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DBNDD1Q9H9R9 158 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DNAJC15Q9Y5T4 150 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR6C75A6NL08 312 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CDC123O75794 336 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TOXO94900 526 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CD1DP15813 335 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 AQP1P29972 269 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CCND3P30281 292 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ICAM3P32942 547 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MC3RP41968 323 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARL4DP49703 201 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ATXN1P54253 815 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CLDN10P78369 228 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MAT1AQ00266 395 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TLE4Q04727 773 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 KIAA0141Q14154 515 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ECM1Q16610 540 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PPP1R26Q5T8A7 1209 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NCBP2-AS2Q69YL0 99 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 GDPD3Q7L5L3 318 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PLA2G15Q8NCC3 412 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR6J1Q8NGC5 347 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZDHHC1Q8WTX9 485 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 STRA6Q9BX79 667 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 GPR39O43194 453 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MPC1LP0DKB6 136 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CLCNKAP51800 687 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 UBE2MP61081 183 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TAZQ16635 292 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ADGRA1Q86SQ6 560 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CCDC190Q86UF4 302 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MFSD4AQ8N468 514 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ADPRHL1Q8NDY3 354 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PLD4Q96BZ4 506 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FUBP3Q96I24 572 aaKnown RBP eCLIP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CCM2Q9BSQ5 444 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SMDT1Q9H4I9 107 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms