RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 APIPQ96GX9 242 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 FAIM2Q9BWQ8 316 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 OR10A5Q9H207 317 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 SUCOQ9UBS9 1254 aaKnown RBP17.74■□□□□ 0.43
CLN3-260ENST00000637578 ZNF639Q9UID6 485 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 PSME2Q9UL46 239 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 DNAJC15Q9Y5T4 150 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 UNC79Q9P2D8 2635 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 CSNK2A2P19784 350 aaPredicted RBP17.74■□□□□ 0.43
CLN3-260ENST00000637578 COL8A1P27658 744 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 UGT3A2Q3SY77 523 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 SLC22A10Q63ZE4 541 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 ATG16L1Q676U5 607 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 GK5Q6ZS86 529 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 TRIM46Q7Z4K8 759 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 DOLPP1Q86YN1 238 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 CLYBLQ8N0X4 340 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 ZNF781Q8N8C0 355 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 DYDC1Q8WWB3 177 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 ZNF75CPQ92670 426 aaPredicted RBP17.74■□□□□ 0.43
CLN3-260ENST00000637578 CTHRC1Q96CG8 243 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 CNRIP1Q96F85 164 aaPredicted RBP17.74■□□□□ 0.43
CLN3-260ENST00000637578 GAL3ST4Q96RP7 486 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 TTTY12Q9BZ98 90 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 HEY2Q9UBP5 337 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 MEMO1Q9Y316 297 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 PTGDR2Q9Y5Y4 395 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 CHCHD2Q9Y6H1 151 aaPredicted RBP17.74■□□□□ 0.43
CLN3-260ENST00000637578 GTF3C1Q12789 2109 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 A0A1B0GTH9 108 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 C2orf92A0A1B0GVN3 265 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 ZNHIT1O43257 154 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 SNNO75324 88 aaPredicted RBP17.73■□□□□ 0.43
CLN3-260ENST00000637578 P04436 131 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 DRD2P14416 443 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 ABOP16442 354 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 PPIAP62937 165 aaKnown RBP17.73■□□□□ 0.43
CLN3-260ENST00000637578 ACSM2AQ08AH3 577 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 ACSM2BQ68CK6 577 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 RPTNQ6XPR3 784 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 TUBB1Q9H4B7 451 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 IL1RL2Q9HB29 575 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 PROK2Q9HC23 129 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 MAT2BQ9NZL9 334 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 SH3BGRL2Q9UJC5 107 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 DLGAP4Q9Y2H0 992 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 RAP2CQ9Y3L5 183 aa17.73■□□□□ 0.43
CLN3-260ENST00000637578 G3V3Y1 287 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 KLF11O14901 512 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 PCDH7O60245 1069 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 ERAL1O75616 437 aaKnown RBP17.72■□□□□ 0.43
CLN3-260ENST00000637578 SNUPNO95149 360 aaKnown RBP17.72■□□□□ 0.43
CLN3-260ENST00000637578 CHEK2O96017 543 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 NT5EP21589 574 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 TIA1P31483 386 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLN3-260ENST00000637578 FEN1P39748 380 aaKnown RBP17.72■□□□□ 0.43
CLN3-260ENST00000637578 GSTM5P46439 218 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 ADORA2A-AS1P86434 159 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 DUSP2Q05923 314 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 ART3Q13508 389 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 NTRK2Q16620 822 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 FAM47EQ6ZV65 393 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 TAGAPQ8N103 731 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 VWA5B2Q8N398 1253 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 FBXW8Q8N3Y1 598 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 ZNF808Q8N4W9 903 aaPredicted RBP17.72■□□□□ 0.43
CLN3-260ENST00000637578 TWIST2Q8WVJ9 160 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 PHF12Q96QT6 1004 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 THAP1Q9NVV9 213 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 CNIH4Q9P003 139 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 HAO1Q9UJM8 370 aa17.72■□□□□ 0.43
CLN3-260ENST00000637578 ACOT7O00154 380 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 ADAM10O14672 748 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 IL3P08700 152 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 AGAP20933 346 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 PTGS2P35354 604 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 DCTP40126 519 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 DNASE1L1P49184 302 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 NR0B1P51843 470 aaKnown RBP17.71■□□□□ 0.43
CLN3-260ENST00000637578 OCRLQ01968 901 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 ARHGAP11AQ6P4F7 1023 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 FAM111BQ6SJ93 734 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 MRGPRGQ86SM5 289 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 SLC22A16Q86VW1 577 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 OR10G3Q8NGC4 313 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLN3-260ENST00000637578 FAM57AQ8TBR7 257 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 LRRC8CQ8TDW0 803 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 C16orf78Q8WTQ4 265 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 KLHL29Q96CT2 875 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 TUBA8Q9NY65 449 aaPredicted RBP17.71■□□□□ 0.43
CLN3-260ENST00000637578 UTS2RQ9UKP6 389 aa17.71■□□□□ 0.43
CLN3-260ENST00000637578 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.71■□□□□ 0.43
CLN3-260ENST00000637578 GNG14A0A1W2PPG7 69 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 ANKRD33BA6NCL7 494 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 E9PLN8 166 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 PRRG2O14669 202 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 PIP5K1BO14986 540 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 IGHG3P01860 377 aa17.7■□□□□ 0.42
CLN3-260ENST00000637578 GPX3P22352 226 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms