RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TCF20Q9UGU0 1960 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 C1orf226A1L170 272 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 HYKKA2RU49 373 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 WASH3PC4AMC7 463 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GFRA2O00451 464 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CASKO14936 926 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PROM1O43490 865 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TSPAN6O43657 245 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 AKAP8O43823 692 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SLC19A2O60779 497 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SCN2BO60939 215 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CDRT1O95170 752 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 KLK1P06870 262 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FURINP09958 794 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 IL7P13232 177 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 MAGP20916 626 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FSHRP23945 695 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CHMP24386 653 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 MYL9P24844 172 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SLC19A1P41440 591 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GPR1P46091 355 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 OR1E2P47887 323 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GATMP50440 423 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 DUSP3P51452 185 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GNG2P59768 71 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TBPL1P62380 186 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TARDBPQ13148 414 aaKnown RBP eCLIP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CARTPTQ16568 116 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CDKN3Q16667 212 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TBRG1Q3YBR2 411 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SOWAHCQ53LP3 525 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 C3orf38Q5JPI3 329 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TMIGD1Q6UXZ0 262 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SLCO4C1Q6ZQN7 724 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 DPPA4Q7L190 304 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SNX29P2Q8IUI4 249 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FAM20CQ8IXL6 584 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 UBQLNLQ8IYU4 475 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 C10orf111Q8N326 155 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 OR9Q2Q8NGE9 314 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PIGXQ8TBF5 258 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 MAL2Q969L2 176 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 EID2BQ96D98 161 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 OTUB2Q96DC9 234 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CHFRQ96EP1 664 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 MRPL48Q96GC5 212 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SCLYQ96I15 445 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 RBM14Q96PK6 669 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 IL4I1Q96RQ9 567 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 KCNK17Q96T54 332 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 BTBD1Q9H0C5 482 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TP63Q9H3D4 680 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 RC3H2Q9HBD1 1191 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 AASSQ9UDR5 926 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 IL36AQ9UHA7 158 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PCDHGA1Q9Y5H4 931 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PTPRZ1P23471 2315 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 A0A0U1RQS6 177 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FAM240BA0A1B0GVZ2 78 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 LEFTY2O00292 366 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 KMOO15229 486 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PRKYO43930 277 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 HLA-DPB1P04440 258 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 HMGN1P05114 100 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 BCHEP06276 602 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TNNI3P19429 210 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CD70P32970 193 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CCR8P51685 355 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 HBA1P69905 142 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 IFITM3Q01628 133 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PTSQ03393 145 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM115Q12893 351 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GAB1Q13480 694 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ASAH1Q13510 395 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 PTPRRQ15256 657 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF805Q5CZA5 627 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM201Q5SNT2 666 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FAM71E1Q6IPT2 247 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 Q6ZVU0 165 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GDPD3Q7L5L3 318 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF551Q7Z340 670 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GATAD2AQ86YP4 633 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 RASGRP3Q8IV61 690 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 LAS2Q8IYD9 372 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 FAM83FQ8NEG4 500 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GNPDA2Q8TDQ7 276 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ASB15Q8WXK1 588 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ACOT12Q8WYK0 555 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 WDR34Q96EX3 536 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 GON7Q9BXV9 100 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 POLDIP3Q9BY77 421 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ACER3Q9NUN7 267 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TVP23BQ9NYZ1 205 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 DNAJC27Q9NZQ0 273 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 DIMT1Q9UNQ2 313 aaKnown RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 CLCA2Q9UQC9 943 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 SPIN1Q9Y657 262 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-214ENST00000637038 TET1Q8NFU7 2136 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 NEDD8-MDP1E9PL57 170 aa3.77□□□□□ -1.81
SCN1A-214ENST00000637038 ADAM12O43184 909 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms