RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 B3GNT7Q8NFL0 401 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.77□□□□□ -0.53
PNKP-217ENST00000625216 TSPEARQ8WU66 669 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 GFM2Q969S9 779 aaKnown RBP11.77□□□□□ -0.53
PNKP-217ENST00000625216 VPS33AQ96AX1 596 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 KLHL29Q96CT2 875 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 ZBTB18Q99592 522 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 CENPKQ9BS16 269 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 DEFB126Q9BYW3 111 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 CDCP1Q9H5V8 836 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 TRIM45Q9H8W5 580 aaPredicted RBP11.77□□□□□ -0.53
PNKP-217ENST00000625216 LYRM4Q9HD34 91 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 MYNNQ9NPC7 610 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 PRDM7Q9NQW5 492 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 AHSPQ9NZD4 102 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 PPIEQ9UNP9 301 aaKnown RBP11.77□□□□□ -0.53
PNKP-217ENST00000625216 OSGIN2Q9Y236 505 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 SPTBN1Q01082 2364 aaKnown RBP11.77□□□□□ -0.53
PNKP-217ENST00000625216 MAST4O15021 2626 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 GNG14A0A1W2PPG7 69 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 CCDC154A6NI56 674 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 CYR61O00622 381 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 SCAMP2O15127 329 aaKnown RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 CERS1P27544 350 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 TRHRP34981 398 aaPredicted RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 ASMTP46597 345 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 CLCN2P51788 898 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 TDGF1P3P51864 188 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 ARFIP1P53367 373 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 CLNS1AP54105 237 aaKnown RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 MLF1P58340 268 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 KCNJ2P63252 427 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 PHC1P78364 1004 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 MXRA7P84157 204 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 OC90Q02509 493 aaPredicted RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 SLC13A2Q13183 592 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 OR1C1Q15619 314 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 FAM174BQ3ZCQ3 159 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 PAGE3Q5JUK9 113 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 OR4C11Q6IEV9 310 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 FAM71E1Q6IPT2 247 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 SLC25A25Q6KCM7 469 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 PAGE2Q7Z2X7 111 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 FAM9CQ8IZT9 166 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 MMP21Q8N119 569 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 TMEM132CQ8N3T6 1108 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 GLB1L3Q8NCI6 653 aaPredicted RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 UTP4Q969X6 686 aaKnown RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 TESCQ96BS2 214 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 SCMH1Q96GD3 660 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 BTBD10Q9BSF8 475 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 CADM1Q9BY67 442 aaKnown RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 DDX31Q9H8H2 851 aaKnown RBP11.76□□□□□ -0.53
PNKP-217ENST00000625216 KCMF1Q9P0J7 381 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 LRFN1Q9P244 771 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 ADAM29Q9UKF5 820 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 SPACA6W5XKT8 324 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 HIVEP3Q5T1R4 2406 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 SCN2AQ99250 2005 aa11.76□□□□□ -0.53
PNKP-217ENST00000625216 DOPEY1Q5JWR5 2465 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 A0A1W2PP18 115 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 A8MUA0 341 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 FXYD1O00168 92 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 ANGPT2O15123 496 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 CFLARO15519 480 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 LRRTM2O43300 516 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SCELO95171 688 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SP1P08047 785 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 IL3P08700 152 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 PCSK2P16519 638 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 PRPS1L1P21108 318 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 HIST1H1TP22492 207 aaPredicted RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 ATP5A1P25705 553 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 CYB561P49447 251 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 MAPK12P53778 367 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 RBPJQ06330 500 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 STX5Q13190 355 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 BIKQ13323 160 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 PDE7AQ13946 482 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SERTAD2Q14140 314 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 ELAVL1Q15717 326 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 KRTCAP3Q53RY4 240 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 ZNF385BQ569K4 471 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 CCNYL2Q5T2Q4 361 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SPINK14Q6IE38 97 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 MRM1Q6IN84 353 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 ANKRD26P1Q6NSI1 321 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SLC2A7Q6PXP3 512 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 GFRALQ6UXV0 394 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 MAMDC2Q7Z304 686 aaPredicted RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 ACOT4Q8N9L9 421 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 FAM98AQ8NCA5 519 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 APCDD1LQ8NCL9 501 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 OR7A2PQ8NGA2 310 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 DAZLQ92904 295 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 RELTQ969Z4 430 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 TM4SF18Q96CE8 201 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 VMP1Q96GC9 406 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SIGLEC12Q96PQ1 595 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 C1orf21Q9H246 121 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms