RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 CREBBPQ92793 2442 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 NPIPA5A0A0B4J1W7 369 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 NPIPA7E9PJI5 369 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 FAM20BO75063 409 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 SCELO95171 688 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 AIFM1O95831 613 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 NPIPA8P0DM63 369 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 NR2C1P13056 603 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 RFC3P40938 356 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 ADARP55265 1226 aaKnown RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 ACTR3P61158 418 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CDKL1Q00532 357 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 RUNX1T1Q06455 604 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 C16orf72Q14CZ0 275 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 YOD1Q5VVQ6 348 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 C18orf63Q68DL7 685 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 FAM111BQ6SJ93 734 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CNTN4Q8IWV2 1026 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CHERPQ8IWX8 916 aaKnown RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 FAR1Q8WVX9 515 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CNBD2Q96M20 576 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 OR5B2Q96R09 309 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 RTKNQ9BST9 563 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 SCNM1Q9BWG6 230 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 PRDM9Q9NQV7 894 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 ZSWIM8A7E2V4 1837 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 WASHC1A8K0Z3 465 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 MYL12BO14950 172 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CLOCKO15516 846 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 SOX30O94993 753 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 HMGN2P05204 90 aaKnown RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 EFR3AQ14156 821 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 CLEC12AQ5QGZ9 265 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 WASH2PQ6VEQ5 465 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 PTRH1Q86Y79 214 aaKnown RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 OR52P1PQ8NH57 321 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 DNAJB8Q8NHS0 232 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 PROKR1Q8TCW9 393 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 APOBEC4Q8WW27 367 aaKnown RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 TP53INP1Q96A56 240 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 TLCD1Q96CP7 247 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 NAA11Q9BSU3 229 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 ERVMER34-1Q9H9K5 563 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 OCIAD1Q9NX40 245 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 PDP1Q9P0J1 537 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-229ENST00000622668 IKZF3Q9UKT9 509 aa8.56□□□□□ -1.04
HDAC9-229ENST00000622668 AK1P00568 194 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 RENP00797 406 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ZGLP1P0C6A0 271 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 FGF3P11487 239 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 GSTM5P46439 218 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 NRF1Q16656 503 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PERM1Q5SV97 790 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 UBAP2Q5T6F2 1119 aaKnown RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 SLC23A3Q6PIS1 610 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 SBSNQ6UWP8 590 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 OR1J4Q8NGS1 313 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 MOSPD2Q8NHP6 518 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 TSLPQ969D9 159 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 DEFB127Q9H1M4 99 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ARL8BQ9NVJ2 186 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PTBP2Q9UKA9 531 aaKnown RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 NRG2O14511 850 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 DSCR3O14972 297 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ADAMDEC1O15204 470 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PRKRAO75569 313 aaKnown RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 HOXB3P14651 431 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 DRD4P21917 467 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 CPOXP36551 454 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 NFATC3Q12968 1075 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 EEF1A1P5Q5VTE0 462 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 TMEM154Q6P9G4 183 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ZNF775Q96BV0 537 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 EGLN2Q96KS0 407 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 MS4A4EQ96PG1 132 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 C9orf16Q9BUW7 83 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PLEKHA1Q9HB21 404 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 GALNT8Q9NY28 637 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 MMACHCQ9Y4U1 282 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 GMPPBQ9Y5P6 360 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PTPRFP10586 1907 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 OR2W5A6NFC9 320 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 GJE1A6NN92 205 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ATXN7O15265 892 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 CTNSO60931 367 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 FKBP6O75344 327 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 IFI30P13284 250 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 NELFEP18615 380 aaKnown RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 DDCP20711 480 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 MAPK14Q16539 360 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 CCNJQ5T5M9 372 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ALG1LQ6GMV1 187 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 TMPRSS12Q86WS5 348 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ZDHHC21Q8IVQ6 265 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 SFTPA2Q8IWL1 248 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 PELI3Q8N2H9 469 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 GPR137CQ8N3F9 429 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 ZNF483Q8TF39 744 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-229ENST00000622668 DNASE2BQ8WZ79 361 aa8.55□□□□□ -1.04
HDAC9-229ENST00000622668 CIDECQ96AQ7 238 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms