RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 GALTP07902 379 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 C1SP09871 688 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SULT1A3P0DMM9 295 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SULT1A4P0DMN0 295 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HOXD9P28356 352 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 RBMS1P29558 406 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 LCN1P31025 176 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 RPIAP49247 311 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HNMTP50135 292 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 CAV3P56539 151 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 CTBP2P56545 445 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 CHMP1BQ7LBR1 199 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 PRICKLE2Q7Z3G6 844 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SPRED2Q7Z698 418 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 DNAJB7Q7Z6W7 309 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 LRRC28Q86X40 367 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 UXS1Q8NBZ7 420 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 KCT2Q8NC54 265 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HJURPQ8NCD3 748 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HUS1BQ8NHY5 278 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 NFKBIDQ8NI38 313 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 RBCK1Q9BYM8 510 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SLC6A17Q9H1V8 727 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 OR51B5Q9H339 312 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 MRPS18AQ9NVS2 196 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HCN3Q9P1Z3 774 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 GMEB2Q9UKD1 530 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 EXO1Q9UQ84 846 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 YARS2Q9Y2Z4 477 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 TRBC2A0A5B9 178 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HEPACAM2A8MVW5 462 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 GPR171O14626 319 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 YY2O15391 372 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SRPRAP08240 638 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ETFAP13804 333 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 HOXB3P14651 431 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 JUPP14923 745 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ITGALP20701 1170 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SSTR2P30874 369 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 PPM1AP35813 382 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 FEN1P39748 380 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 RGRP47804 291 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 AP1S2P56377 157 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ZXDBP98169 803 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 CDK6Q00534 326 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 DSC1Q08554 894 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SCRN3Q0VDG4 424 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 EFEMP1Q12805 493 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 UPP1Q16831 310 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 TUSC1Q2TAM9 212 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 NHLRC3Q5JS37 347 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 MACC1Q6ZN28 852 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 LRRTM3Q86VH5 581 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 DENND1CQ8IV53 801 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 NEIL3Q8TAT5 605 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ADAMTS19Q8TE59 1207 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ADAMTS14Q8WXS8 1223 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SMG7Q92540 1137 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 CLP1Q92989 425 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 WBP1Q96G27 269 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 UROC1Q96N76 676 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 OR4K3Q96R72 315 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 REG4Q9BYZ8 158 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 ACTR6Q9GZN1 396 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 POLR2J3Q9H1A7 115 aaKnown RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 FGF20Q9NP95 211 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-212ENST00000619079 DLL4Q9NR61 685 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 SEMA3GQ9NS98 782 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 PFDN2Q9UHV9 154 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 TRAV6A0A075B6T7 132 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 F8W810 466 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GTPBP1O00178 669 aaKnown RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CHST10O43529 356 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SLC28A2O43868 658 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 UGDHO60701 494 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 LDOC1O95751 146 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CXCL3P19876 107 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GALP22466 123 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 AHCYP23526 432 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 NNMTP40261 264 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SYT14P1Q58G82 188 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 RAET1GQ6H3X3 334 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 KIAA1211LQ6NV74 962 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CEACAM20Q6UY09 585 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 MBOAT1Q6ZNC8 495 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ASB18Q6ZVZ8 466 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 OR5T2Q8NGG2 359 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 OR5M3Q8NGP4 307 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GOT1L1Q8NHS2 421 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 LKAAEAR1Q8TD35 194 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 PCNPQ8WW12 178 aaKnown RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GPR63Q9BZJ6 419 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ENAMQ9NRM1 1142 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CYSLTR2Q9NS75 346 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 KCTD5Q9NXV2 234 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SPG21Q9NZD8 308 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 KCMF1Q9P0J7 381 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 KLHL42Q9P2K6 505 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GULP1Q9UBP9 304 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CBLCQ9ULV8 474 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms