RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 COLEC12Q5KU26 742 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 KLHDC7BQ96G42 594 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 SERINC2Q96SA4 455 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 PRR14Q9BWN1 585 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 FOXQ1Q9C009 403 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 CTPS2Q9NRF8 586 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 A4GNTQ9UNA3 340 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 SNX5Q9Y5X3 404 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 KIR2DS5A0A0G2JLQ3 304 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 A0A0G2JNG1 304 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 TMEM247A6NEH6 219 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 KIR2DS3K7RE56 304 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 ZNF701M0R085 212 aaPredicted RBP13.59□□□□□ -0.23
VRK3-217ENST00000599538 TOR1BO14657 336 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 FAM20BO75063 409 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 SERPINB7O75635 380 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 ELAVL4P26378 380 aaKnown RBP13.59□□□□□ -0.23
VRK3-217ENST00000599538 PPP2R1BP30154 601 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 MAZP56270 477 aaKnown RBP13.59□□□□□ -0.23
VRK3-217ENST00000599538 CXCR4P61073 352 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 MVKQ03426 396 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 KIR2DS5Q14953 304 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 TAGAPQ8N103 731 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 OR56A1Q8NGH5 318 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 OR6T1Q8NGN1 323 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 ZNF420Q8TAQ5 688 aaPredicted RBP13.59□□□□□ -0.23
VRK3-217ENST00000599538 MIPOL1Q8TD10 442 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 ZDHHC1Q8WTX9 485 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 FKBP10Q96AY3 582 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 MSANTD3Q96H12 275 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 GIMAP4Q9NUV9 329 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 ZNF226Q9NYT6 803 aa13.59□□□□□ -0.23
VRK3-217ENST00000599538 KRBA1A5PL33 1030 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 LDB3O75112 727 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 ST6GAL1P15907 406 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 ALOX12P18054 663 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 BUD31P41223 144 aaPredicted RBP13.58□□□□□ -0.23
VRK3-217ENST00000599538 NUDT6P53370 316 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 PRR5P85299 388 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 CHRNEQ04844 493 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 PTGES3Q15185 160 aaKnown RBP13.58□□□□□ -0.23
VRK3-217ENST00000599538 AHSA2Q719I0 299 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 CAMKVQ8NCB2 501 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 SLC16A11Q8NCK7 471 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 SLC7A13Q8TCU3 470 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 ZFPM2Q8WW38 1151 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 FUNDC2Q9BWH2 189 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 SLC38A1Q9H2H9 487 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 BCL2L10Q9HD36 194 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 PSME2Q9UL46 239 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 TPRKBQ9Y3C4 175 aa13.58□□□□□ -0.23
VRK3-217ENST00000599538 A0A0J9YY10 115 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 A0A1B0GVG6 124 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 CHURC1-FNTBB4DL54 471 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 FRS3O43559 492 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 B3GALT2O43825 422 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 FCMRO60667 390 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 ITIH1P19827 911 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 NUP107P57740 925 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 VSX2P58304 361 aaPredicted RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 UBXN2BQ14CS0 331 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 TRMT12Q53H54 448 aaKnown RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 BHLHB9Q6PI77 547 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 CCDC81Q6ZN84 652 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 ZBTB46Q86UZ6 589 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 PARGQ86W56 976 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 VRK2Q86Y07 508 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 LRRC25Q8N386 305 aaPredicted RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 PARP8Q8N3A8 854 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 OR4K14Q8NGD5 310 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 RHOXF1Q8NHV9 184 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 RERGQ96A58 199 aaPredicted RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 SLC35A4Q96G79 324 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 CNDP2Q96KP4 475 aaKnown RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 DHRS1Q96LJ7 313 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 PSD2Q9BQI7 771 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 ZNF556Q9HAH1 456 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 C3orf14Q9HBI5 128 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 SCN3BQ9NY72 215 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 SELENONQ9NZV5 590 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 ACAD8Q9UKU7 415 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 GPR55Q9Y2T6 319 aaPredicted RBP13.58□□□□□ -0.24
VRK3-217ENST00000599538 CHST2Q9Y4C5 530 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 KLK4Q9Y5K2 254 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 ENTPD2Q9Y5L3 495 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 SLC22A7Q9Y694 548 aa13.58□□□□□ -0.24
VRK3-217ENST00000599538 OR5K3A6NET4 321 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 TRIM64BA6NI03 449 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 A8MVJ9 347 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 FADS2O95864 444 aaKnown RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 H1F0P07305 194 aaKnown RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 CDK4P11802 303 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 GABRB1P18505 474 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 CHMP24386 653 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 STT3AP46977 705 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 SRSF5Q13243 272 aaKnown RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 SLC16A12Q6ZSM3 486 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 RNF44Q7L0R7 432 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 KRT73Q86Y46 540 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 BBS10Q8TAM1 723 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms