RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 PLIN3O60664 434 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 HCN1O60741 890 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 TRIM3O75382 744 aaPredicted RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 IL3P08700 152 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 COX6B1P14854 86 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 CPA3P15088 417 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 NAGAP17050 411 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 GPX3P22352 226 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 FOXA1P55317 472 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 DNAJB13P59910 316 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 NAA20P61599 178 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 ACSM2AQ08AH3 577 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 DUSP8Q13202 625 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 EXOSC7Q15024 291 aaKnown RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 CCDC153Q494R4 210 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 SPIN4Q56A73 249 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 TBCELQ5QJ74 424 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 TMEM198Q66K66 360 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 ACSM2BQ68CK6 577 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 GALNT18Q6P9A2 607 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 PRR22Q8IZ63 422 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 LRRC25Q8N386 305 aaPredicted RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 LILRB4Q8NHJ6 448 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 C16orf78Q8WTQ4 265 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 RND1Q92730 232 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 C11orf24Q96F05 449 aaPredicted RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 JSRP1Q96MG2 331 aaPredicted RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 SECISBP2Q96T21 854 aaKnown RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 DOHHQ9BU89 302 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 ANGPTL4Q9BY76 406 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 NXF5Q9H1B4 397 aaKnown RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 C12orf65Q9H3J6 166 aaKnown RBP13.84□□□□□ -0.19
LIG1-215ENST00000597901 EXO5Q9H790 373 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 ACKR4Q9NPB9 350 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 SIRT5Q9NXA8 310 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 RNF6Q9Y252 685 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 DTX4Q9Y2E6 619 aa13.84□□□□□ -0.19
LIG1-215ENST00000597901 CACNA1DQ01668 2161 aa13.83□□□□□ -0.19
LIG1-215ENST00000597901 COPEO14579 308 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 SNX4O95219 450 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 CBX7O95931 251 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 ABCB1P08183 1280 aaPredicted RBP13.83□□□□□ -0.2
LIG1-215ENST00000597901 ANXA4P09525 319 aaPredicted RBP13.83□□□□□ -0.2
LIG1-215ENST00000597901 KRT4P19013 534 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 DRD5P21918 477 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 ACVR2AP27037 513 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 ABCD3P28288 659 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 PTGER4P35408 488 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 CASP3P42574 277 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 NUP107P57740 925 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 RPS6KA2Q15349 733 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 LTB4RQ15722 352 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 SPDYAQ5MJ70 313 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 BICRALQ6AI39 1079 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 ACAD11Q709F0 780 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 NUP54Q7Z3B4 507 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 OR52R1Q8NGF1 315 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 EPS8L3Q8TE67 593 aaKnown RBP13.83□□□□□ -0.2
LIG1-215ENST00000597901 ASB5Q8WWX0 329 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 SARAFQ96BY9 339 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 LCORQ96JN0 433 aaPredicted RBP13.83□□□□□ -0.2
LIG1-215ENST00000597901 ZNF703Q9H7S9 590 aaPredicted RBP13.83□□□□□ -0.2
LIG1-215ENST00000597901 OXSMQ9NWU1 459 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 QPCTLQ9NXS2 382 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 ALKBH4Q9NXW9 302 aa13.83□□□□□ -0.2
LIG1-215ENST00000597901 TEX15Q9BXT5 2789 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 TLDC2A0PJX2 215 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 H3BQF6 201 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 PPM1BO75688 479 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 PCSK2P16519 638 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 TIA1P31483 386 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIG1-215ENST00000597901 PPICP45877 212 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 TMED10P49755 219 aaKnown RBP13.82□□□□□ -0.2
LIG1-215ENST00000597901 EMDP50402 254 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 RPP38P78345 283 aaKnown RBP13.82□□□□□ -0.2
LIG1-215ENST00000597901 SLC18A2Q05940 514 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 C2orf80Q0P641 193 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 HEPACAMQ14CZ8 416 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 CFAP157Q5JU67 520 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 WLSQ5T9L3 541 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 RTL6Q6ICC9 239 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 TRIM46Q7Z4K8 759 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 GDF7Q7Z4P5 450 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 PACS2Q86VP3 889 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 CCDC71Q8IV32 467 aaPredicted RBP13.82□□□□□ -0.2
LIG1-215ENST00000597901 SAMD14Q8IZD0 417 aaPredicted RBP13.82□□□□□ -0.2
LIG1-215ENST00000597901 CCDC63Q8NA47 563 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 RDH11Q8TC12 318 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 EXOSC8Q96B26 276 aaKnown RBP13.82□□□□□ -0.2
LIG1-215ENST00000597901 NTNG2Q96CW9 530 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 HSPBAP1Q96EW2 488 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 SPOCK3Q9BQ16 436 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 TTYH2Q9BSA4 534 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 ITPAQ9BY32 194 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 UCK2Q9BZX2 261 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 ANKZF1Q9H8Y5 726 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 PFDN4Q9NQP4 134 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 SLC35C2Q9NQQ7 365 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 SPRR3Q9UBC9 169 aa13.82□□□□□ -0.2
LIG1-215ENST00000597901 PRODH2Q9UF12 536 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms