RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	VASN	Q6EMK4	673 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	FAM180B	Q6P0A1	224 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	METTL2B	Q6P1Q9	378 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	FAM111B	Q6SJ93	734 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	ANGPTL8	Q6UXH0	198 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	COMMD6	Q7Z4G1	85 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	YRDC	Q86U90	279 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	CDC20B	Q86Y33	519 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	PM20D2	Q8IYS1	436 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	VWA5B2	Q8N398	1253 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	ADCY4	Q8NFM4	1077 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	NINJ1	Q92982	152 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	HSPBAP1	Q96EW2	488 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	RMND5B	Q96G75	393 aa	Predicted RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	WDYHV1	Q96HA8	205 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	TRIB1	Q96RU8	372 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	SECISBP2	Q96T21	854 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	TMUB1	Q9BVT8	246 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	UGT2B28	Q9BY64	529 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	BRINP2	Q9C0B6	783 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	PRDM14	Q9GZV8	571 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	EPB41L4B	Q9H329	900 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	METTL7A	Q9H8H3	244 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	GALNT9	Q9HCQ5	603 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	EHD3	Q9NZN3	535 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	XPR1	Q9UBH6	696 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	MTRF1L	Q9UGC7	380 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	PRRC2A	P48634	2157 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	EXPH5	Q8NEV8	1989 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	FREM3	P0C091	2139 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	FAM221A	A4D161	298 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	EEF1E1-BLOC1S5	C9J1V9	151 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PPP6C	O00743	305 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	EEF1E1	O43324	174 aa	Known RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ERAL1	O75616	437 aa	Known RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PPM1B	O75688	479 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	IL2RA	P01589	272 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	KRT15	P19012	456 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	KLK2	P20151	261 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	CNTF	P26441	200 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PTPN6	P29350	595 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	TIMP3	P35625	211 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	SOX18	P35713	384 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	NAGLU	P54802	743 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ETF1	P62495	437 aa	Known RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	RPP38	P78345	283 aa	Known RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	MGAT2	Q10469	447 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	GALNT1	Q10472	559 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	IFT88	Q13099	833 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	LTB4R	Q15722	352 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PRICKLE4	Q2TBC4	344 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	TIGD3	Q6B0B8	471 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	SLC48A1	Q6P1K1	146 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	LETMD1	Q6P1Q0	360 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PAGE2	Q7Z2X7	111 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ZNF572	Q7Z3I7	529 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	TGIF2LY	Q8IUE0	185 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	METTL4	Q8N3J2	472 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	FAM83F	Q8NEG4	500 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	C17orf47	Q8NEP4	570 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	OR7G1	Q8NGA0	311 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	OR4F6	Q8NGB9	312 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	GOT1L1	Q8NHS2	421 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	FAM222B	Q8WU58	562 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ABTB1	Q969K4	478 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	NTNG2	Q96CW9	530 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	TMEM41A	Q96HV5	264 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	NODAL	Q96S42	347 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	HBEGF	Q99075	208 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	LRRC1	Q9BTT6	524 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	NTMT1	Q9BV86	223 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ITPA	Q9BY32	194 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ELOVL6	Q9H5J4	265 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ACSS3	Q9H6R3	686 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	SERHL	Q9NQF3	203 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	RYDEN	Q9NUL5	291 aa	Known RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	MAT2B	Q9NZL9	334 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ZNF629	Q9UEG4	869 aa	Predicted RBP	9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	BCAP29	Q9UHQ4	241 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	ADAM29	Q9UKF5	820 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	CES1P1	Q9UKY3	287 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	SLC12A4	Q9UP95	1085 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	MAPRE3	Q9UPY8	281 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	PCDHA9	Q9Y5H5	950 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	IKBKG	Q9Y6K9	419 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	VPS13C	Q709C8	3753 aa		9.61	□□□□□ -0.87
LSM4-205	ENST00000597776	MBD3L4	A6NDZ8	208 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MBD3L3	A6NE82	208 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MBD3L5	A6NJ08	208 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	CD8B2	A6NJW9	211 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	STX16-NPEPL1	H3BU86	382 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	STX16	O14662	325 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	ICOSLG	O75144	302 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	SMIM24	O75264	130 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	NME6	O75414	186 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	CBX7	O95931	251 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PDYN	P01213	254 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	INHBA	P08476	426 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	RPS17	P08708	135 aa	Known RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	RBP1	P09455	135 aa		9.6	□□□□□ -0.87

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