RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PCSK2P16519 638 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 NR0B1P51843 470 aaKnown RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 NRG3P56975 720 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 DCAF7P61962 342 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 MRPS35P82673 323 aaKnown RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 EXOSC7Q15024 291 aaKnown RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 PRSS53Q2L4Q9 553 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 MDGA2Q7Z553 956 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 OR52R1Q8NGF1 315 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 CLHC1Q8NHS4 586 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 ZNF75CPQ92670 426 aaPredicted RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 KAT2AQ92830 837 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 ADIPOR1Q96A54 375 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 PPP1R36Q96LQ0 422 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 PRPF18Q99633 342 aaKnown RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 C1orf50Q9BV19 199 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 NUF2Q9BZD4 464 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 GLIPR2Q9H4G4 154 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 AKTIPQ9H8T0 292 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 MEAF6Q9HAF1 191 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 NOP53Q9NZM5 478 aaKnown RBP13.89□□□□□ -0.19
UPF1-202ENST00000594243 GIMAP2Q9UG22 337 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 MAPRE3Q9UPY8 281 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 A0A087WV62 115 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ASPDHA6ND91 283 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 TRPC5OSA6NMA1 111 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PLOD2O00469 737 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PDPK1O15530 556 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PLOD3O60568 738 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZNF354AO60765 605 aaPredicted RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 SASH3O75995 380 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 CBX6O95503 412 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 NADKO95544 446 aaPredicted RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 CBX7O95931 251 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 EDN3P14138 238 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PRPS1L1P21108 318 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 GPX3P22352 226 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PTGER1P34995 402 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 SOX18P35713 384 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 HPCAL1P37235 193 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PPP2R2AP63151 447 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PDE7AQ13946 482 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ELOAQ14241 798 aaKnown RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZNF791Q3KP31 576 aaPredicted RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 SLC22A10Q63ZE4 541 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZNF324BQ6AW86 544 aaPredicted RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 SULF2Q8IWU5 870 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 NATD1Q8N6N6 113 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZNF441Q8N8Z8 693 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 POGLUT1Q8NBL1 392 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ST6GALNAC3Q8NDV1 305 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 PSD4Q8NDX1 1056 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZFP28Q8NHY6 868 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 DYDC1Q8WWB3 177 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 HSPBAP1Q96EW2 488 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ZBED6CLQ96FA7 236 aaPredicted RBP13.88□□□□□ -0.19
UPF1-202ENST00000594243 AMDHD1Q96NU7 426 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 SACM1LQ9NTJ5 587 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ATAD3AQ9NVI7 634 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ASIC5Q9NY37 505 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 TAS2R9Q9NYW1 312 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 ATP6V1HQ9UI12 483 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 NPFFR2Q9Y5X5 522 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 MYO18BQ8IUG5 2567 aa13.88□□□□□ -0.19
UPF1-202ENST00000594243 SCAMP2O15127 329 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 HDAC3O15379 428 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 PEX1O43933 1283 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 COQ9O75208 318 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 P04436 131 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 IFI6P09912 130 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 FBXO45P0C2W1 286 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 KITP10721 976 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 G6PDP11413 515 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 LBPP18428 481 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 CNR1P21554 472 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 DRD5P21918 477 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 PPICP45877 212 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 TMED10P49755 219 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 EMDP50402 254 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 MANFP55145 182 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 OCRLQ01968 901 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 ALDH6A1Q02252 535 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 ANKRD26P1Q6NSI1 321 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 LYPD8Q6UX82 237 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 PIWIL2Q8TC59 973 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 LRRC8CQ8TDW0 803 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 NR4A3Q92570 626 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 SPACA9Q96E40 222 aaPredicted RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 LCORQ96JN0 433 aaPredicted RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 SLX1AQ9BQ83 275 aa13.87□□□□□ -0.19
UPF1-202ENST00000594243 ACSS1Q9NUB1 689 aaPredicted RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 INTS9Q9NV88 658 aaKnown RBP13.87□□□□□ -0.19
UPF1-202ENST00000594243 ANKUB1A6NFN9 424 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 TP53I11O14683 189 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 ACOX3O15254 700 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 NAGAP17050 411 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 GNLYP22749 145 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 GPC1P35052 558 aa13.86□□□□□ -0.19
UPF1-202ENST00000594243 FRKP42685 505 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms