RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NPHS1O60500 1241 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 GLSO94925 669 aaPredicted RBP22■■□□□ 1.11
SHMT1-206ENST00000579558 CBX7O95931 251 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 CHEK2O96017 543 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 CHRNGP07510 517 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 PTGS2P35354 604 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 SOX18P35713 384 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 KCNJ2P63252 427 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 MRPS35P82673 323 aaKnown RBP22■■□□□ 1.11
SHMT1-206ENST00000579558 C2orf80Q0P641 193 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 FOXO1Q12778 655 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 DUSP8Q13202 625 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 TRMT12Q53H54 448 aaKnown RBP22■■□□□ 1.11
SHMT1-206ENST00000579558 OR52R1Q8NGF1 315 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 ZNF675Q8TD23 568 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 ZDHHC11Q9H8X9 412 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 MYNNQ9NPC7 610 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 SENP1Q9P0U3 644 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 CCL27Q9Y4X3 112 aa22■■□□□ 1.11
SHMT1-206ENST00000579558 SEC23IPQ9Y6Y8 1000 aaKnown RBP22■■□□□ 1.11
SHMT1-206ENST00000579558 RGS16O15492 202 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 RGS14O43566 566 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 SEC22BO75396 215 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 TUBBP07437 444 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 DDCP20711 480 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 TMED10P49755 219 aaKnown RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 FBXW4P57775 412 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 RPS6KA2Q15349 733 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 NNATQ16517 81 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 ZNF628Q5EBL2 1059 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 KANK2Q63ZY3 851 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 NOXRED1Q6NXP6 359 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 PAOXQ6QHF9 649 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 ZCCHC23Q6ZST2 131 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 PRR22Q8IZ63 422 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 TMEM251Q8N6I4 163 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 SIMC1Q8NDZ2 872 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 OR9A2Q8NGT5 310 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 METTL2AQ96IZ6 378 aaKnown RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 ITPAQ9BY32 194 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 NXF5Q9H1B4 397 aaKnown RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 LRTM1Q9HBL6 345 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 EML4Q9HC35 981 aaKnown RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 MIEF1Q9NQG6 463 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 PLSCR2Q9NRY7 297 aa21.99■■□□□ 1.11
SHMT1-206ENST00000579558 CNOT11Q9UKZ1 510 aaKnown RBP21.99■■□□□ 1.11
SHMT1-206ENST00000579558 TP53I11O14683 189 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 TYROBPO43914 113 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 LRATO95237 230 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 TPOP07202 933 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 NEFHP12036 1026 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 PRPH2P23942 346 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 COL8A1P27658 744 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 MAGEA5P43359 124 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 ARL13AQ5H913 290 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-206ENST00000579558 FAM71E1Q6IPT2 247 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 ARHGAP11AQ6P4F7 1023 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 DOLPP1Q86YN1 238 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 TICAM1Q8IUC6 712 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 FAM9CQ8IZT9 166 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 FAM109AQ8N4B1 249 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 ITLN2Q8WWU7 325 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-206ENST00000579558 DIO2Q92813 273 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 KAT2AQ92830 837 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 BBS4Q96RK4 519 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 C1orf109Q9NX04 203 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 PRODH2Q9UF12 536 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 BOKQ9UMX3 212 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-206ENST00000579558 WBP11Q9Y2W2 641 aaKnown RBP21.98■■□□□ 1.11
SHMT1-206ENST00000579558 MEMO1Q9Y316 297 aa21.98■■□□□ 1.11
SHMT1-206ENST00000579558 NPIPB8E9PQR5 432 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 BCAS2O75934 225 aaPredicted RBP21.97■■□□□ 1.11
SHMT1-206ENST00000579558 ABCD3P28288 659 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 MPIP34949 423 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 KIAA0040Q15053 153 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 CEBPEQ15744 281 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 HYAL4Q2M3T9 481 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 RPTNQ6XPR3 784 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 RNF165Q6ZSG1 346 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 HOMEZQ8IX15 550 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 OR2T11Q8NH01 316 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 PUM2Q8TB72 1066 aaKnown RBP eCLIP21.97■■□□□ 1.11
SHMT1-206ENST00000579558 FAM57AQ8TBR7 257 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 LCORQ96JN0 433 aaPredicted RBP21.97■■□□□ 1.11
SHMT1-206ENST00000579558 PHF12Q96QT6 1004 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 DOHHQ9BU89 302 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 TUBB1Q9H4B7 451 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 ANKRA2Q9H9E1 313 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 PROK2Q9HC23 129 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 DNAJC15Q9Y5T4 150 aa21.97■■□□□ 1.11
SHMT1-206ENST00000579558 ATP6AP2A0A1C7CYW4 349 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 TMEM233B4DJY2 109 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 ATP6AP2O75787 350 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 BPGMP07738 259 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 FGF4P08620 206 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 LINC00032P0C843 101 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 EMDP50402 254 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 TBCELQ5QJ74 424 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 C3P1Q6ZMU1 363 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 Q6ZSR9 355 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms