RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TRPV5Q9NQA5 729 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 UBQLN2Q9UHD9 624 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 RARRES3Q9UL19 164 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TMED7Q9Y3B3 224 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 N6AMT1Q9Y5N5 214 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 MAP2P11137 1827 aaKnown RBP4.13□□□□□ -1.75
NUP88-213ENST00000576862 ATP10DQ9P241 1426 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 TRBV5-4A0A0C4DH59 114 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 LINC00854A0A1B0GVQ3 168 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 KRT87PA6NCN2 255 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 SGK1O00141 431 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 PDHXO00330 501 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 RTN2O75298 545 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 TRIM16O95361 564 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 PNPP00491 289 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 CD1DP15813 335 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 EIF2S2P20042 333 aaKnown RBP4.12□□□□□ -1.75
NUP88-213ENST00000576862 LMO2P25791 158 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 TCF7P36402 384 aaPredicted RBP4.12□□□□□ -1.75
NUP88-213ENST00000576862 MAGEA8P43361 318 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 GSK3BP49841 420 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 KHKP50053 298 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 FKBP1BP68106 108 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 SLC39A6Q13433 755 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 LASP1Q14847 261 aaKnown RBP4.12□□□□□ -1.75
NUP88-213ENST00000576862 C3AR1Q16581 482 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 HIGD2BQ4VC39 106 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 TOR1AIP1Q5JTV8 583 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 C9orf66Q5T8R8 295 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 GBP6Q6ZN66 633 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 MSANTD1Q6ZTZ1 278 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 CATSPER3Q86XQ3 398 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 HPS6Q86YV9 775 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 KLHL7Q8IXQ5 586 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 SLC39A11Q8N1S5 342 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 C4orf32Q8N8J7 132 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 KIAA0895Q8NCT3 520 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 CKAP2Q8WWK9 683 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 RBM14Q96PK6 669 aaKnown RBP4.12□□□□□ -1.75
NUP88-213ENST00000576862 RASL10BQ96S79 203 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 CCM2Q9BSQ5 444 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 MLPHQ9BV36 600 aaPredicted RBP4.12□□□□□ -1.75
NUP88-213ENST00000576862 PINK1Q9BXM7 581 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 SLC39A8Q9C0K1 460 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 WDR41Q9HAD4 459 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 TAS2R3Q9NYW6 316 aa4.12□□□□□ -1.75
NUP88-213ENST00000576862 XIRP1Q702N8 1843 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 AHDC1Q5TGY3 1603 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 FAM208AQ9UK61 1670 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 TRGV8A0A0C4DH27 118 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 C2orf92A0A1B0GVN3 265 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 KIF2AO00139 706 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 PHF1O43189 567 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 RIPK2O43353 540 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 KERAO60938 352 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 NME6O75414 186 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 OR6B1O95007 311 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 STAMBPO95630 424 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 FGF19O95750 216 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 TPM3P06753 285 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 SUPT20HL2P0C7V6 817 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CCDC172P0C7W6 258 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 ADSSP30520 456 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 MTIF2P46199 727 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 ARFIP1P53367 373 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CCNA1P78396 465 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 ITPK1Q13572 414 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CEACAM7Q14002 265 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 C15orf32Q32M92 178 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 TPGS2Q68CL5 300 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 Q6ZR54 194 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 RFPL4BQ6ZWI9 263 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 MTERF4Q7Z6M4 381 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 ADCK1Q86TW2 530 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 LRRC49Q8IUZ0 686 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 LRRC43Q8N309 656 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 HDDC3Q8N4P3 179 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CSNK1G2-AS1Q8NCQ2 148 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 GMCL1P1Q8NEA9 526 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 OR13C5Q8NGS8 318 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 SUN5Q8TC36 379 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 ALKBH3Q96Q83 286 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 HNRNPABQ99729 332 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 TXN2Q99757 166 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 TBCDQ9BTW9 1192 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 MTIF3Q9H2K0 278 aaKnown RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 CLSTN2Q9H4D0 955 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 MOB1AQ9H8S9 216 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 COPS7BQ9H9Q2 264 aaPredicted RBP4.11□□□□□ -1.75
NUP88-213ENST00000576862 KCNK13Q9HB14 408 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 GPR173Q9NS66 373 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 ACTR3BQ9P1U1 418 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CDH7Q9ULB5 785 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 TMED5Q9Y3A6 229 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 PCDH11XQ9BZA7 1347 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 COL18A1P39060 1754 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 ADCY9O60503 1353 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 DISP2A7MBM2 1401 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 MRC1P22897 1456 aa4.11□□□□□ -1.75
NUP88-213ENST00000576862 CRYBG1Q9Y4K1 1723 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms