RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 HGDQ93099 445 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 CNRIP1Q96F85 164 aaPredicted RBP16.58■□□□□ 0.24
CHD3-214ENST00000572579 TMEM237Q96Q45 408 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 TIMP4Q99727 224 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 TXLNGYQ9BZA5 131 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 EXO5Q9H790 373 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 QPCTLQ9NXS2 382 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 AHSPQ9NZD4 102 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 NFU1Q9UMS0 254 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 IKBKGQ9Y6K9 419 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 HCFC1P51610 2035 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 PHF3Q92576 2039 aaKnown RBP16.58■□□□□ 0.24
CHD3-214ENST00000572579 ZFHX3Q15911 3703 aa16.58■□□□□ 0.24
CHD3-214ENST00000572579 FOXO6A8MYZ6 492 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 ATP1B1P05026 303 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 CAPN3P20807 821 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 ABCD3P28288 659 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 EMDP50402 254 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 HTR6P50406 440 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 CRYZQ08257 329 aaKnown RBP16.57■□□□□ 0.24
CHD3-214ENST00000572579 PRSS53Q2L4Q9 553 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 EIPR1Q53HC9 387 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 TEX35Q5T0J7 233 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 DCST1Q5T197 706 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 PAGE2Q7Z2X7 111 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 CDYL2Q8N8U2 506 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 C17orf47Q8NEP4 570 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 MZB1Q8WU39 189 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 NRGNQ92686 78 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 NODALQ96S42 347 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 ITPAQ9BY32 194 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 ANKRA2Q9H9E1 313 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 BRF2Q9HAW0 419 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 TRPS1Q9UHF7 1281 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 SLC6A5Q9Y345 797 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 L3MBTL1Q9Y468 752 aa16.57■□□□□ 0.24
CHD3-214ENST00000572579 C1orf226A1L170 272 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 C2orf72A6NCS6 295 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 ERAL1O75616 437 aaKnown RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 HPNP05981 417 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 ABHD2P08910 425 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 PCSK2P16519 638 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 CDK9P50750 372 aaKnown RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 MRPS35P82673 323 aaKnown RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 RIPPLY2Q5TAB7 128 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 CDH24Q86UP0 819 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 VWA5B2Q8N398 1253 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 RELL2Q8NC24 303 aaPredicted RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 TNIP2Q8NFZ5 429 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 C11orf24Q96F05 449 aaPredicted RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 APIPQ96GX9 242 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 SECISBP2Q96T21 854 aaKnown RBP16.56■□□□□ 0.24
CHD3-214ENST00000572579 ACPTQ9BZG2 426 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 SNX6Q9UNH7 406 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 C15orf41Q9Y2V0 281 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 PLLPQ9Y342 182 aa16.56■□□□□ 0.24
CHD3-214ENST00000572579 ZNF469Q96JG9 3925 aaPredicted RBP16.55■□□□□ 0.24
CHD3-214ENST00000572579 EXOC1LA0A1B0GW35 172 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 B4DXG7 233 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 GOLGA8RI6L899 631 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 TP53I11O14683 189 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 RIPK2O43353 540 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 TRAPPC6AO75865 159 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 SUPT7LO94864 414 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 SNX4O95219 450 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 CSNK2A2P19784 350 aaPredicted RBP16.55■□□□□ 0.24
CHD3-214ENST00000572579 GDF1P27539 372 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 PTPN6P29350 595 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 ACSF3Q4G176 576 aaPredicted RBP16.55■□□□□ 0.24
CHD3-214ENST00000572579 TBCELQ5QJ74 424 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 HLA-DQA1Q5Y7H0 255 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 TMEM198Q66K66 360 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 TIGD3Q6B0B8 471 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 SH2D5Q6ZV89 423 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 TAOK1Q7L7X3 1001 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 LRRN4CLQ8ND94 238 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 MNS1Q8NEH6 495 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 OR52R1Q8NGF1 315 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 ZNF597Q96LX8 424 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 BRINP2Q9C0B6 783 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 RYDENQ9NUL5 291 aaKnown RBP16.55■□□□□ 0.24
CHD3-214ENST00000572579 EHD3Q9NZN3 535 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 VPS29Q9UBQ0 182 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 EMCNQ9ULC0 261 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 PCDHGB3Q9Y5G1 929 aa16.55■□□□□ 0.24
CHD3-214ENST00000572579 MED12Q93074 2177 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 C15orf38-AP3S2A0A0A6YYH1 394 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 UBFD1O14562 309 aaKnown RBP16.54■□□□□ 0.24
CHD3-214ENST00000572579 PPM1BO75688 479 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 EPPINO95925 133 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 GABRA1P14867 456 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 BMP7P18075 431 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 IMPDH1P20839 514 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 CEACAM8P31997 349 aaPredicted RBP16.54■□□□□ 0.24
CHD3-214ENST00000572579 PRKAA2P54646 552 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 HMGCS1Q01581 520 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 ZNF628Q5EBL2 1059 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 VASNQ6EMK4 673 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 CCDC116Q8IYX3 515 aa16.54■□□□□ 0.24
CHD3-214ENST00000572579 WDSUB1Q8N9V3 476 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms