RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SLC9A5Q14940 896 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 ZNF750Q32MQ0 723 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 ENTPD8Q5MY95 495 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 PHC2Q8IXK0 858 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 TTLQ8NG68 377 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 OR52I1Q8NGK6 324 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 MS4A6EQ96DS6 147 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 SPATA5L1Q9BVQ7 753 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 OSGEPL1Q9H4B0 414 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 WDR26Q9H7D7 661 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 SIAEQ9HAT2 523 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 PRDM7Q9NQW5 492 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 DPP7Q9UHL4 492 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 A0A1W2PR48 441 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 HYKKA2RU49 373 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 GPR89AB7ZAQ6 455 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 HMGN2P05204 90 aaKnown RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 GPR89BP0CG08 455 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 HOXB3P14651 431 aaPredicted RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 NTSP30990 170 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 AGERQ15109 404 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 KCNJ8Q15842 424 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 MRM1Q6IN84 353 aaKnown RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 AKAP14Q86UN6 197 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 CNRIP1Q96F85 164 aaPredicted RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 CEP19Q96LK0 163 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 PRRC1Q96M27 445 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 KLHL3Q9UH77 587 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 KLHL20Q9Y2M5 609 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 ATG4BQ9Y4P1 393 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 C5orf67F2Z3F1 127 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 ERAL1O75616 437 aaKnown RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 ALPPL2P10696 532 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 PKLRP30613 574 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 DEFA1P59665 94 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 DEFA3P59666 94 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 FGL2Q14314 439 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 LASP1Q14847 261 aaKnown RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 IRF4Q15306 451 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 KIAA1211LQ6NV74 962 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 OR2L8Q8NGY9 312 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 OR8K5Q8NH50 307 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 BADQ92934 168 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 ZNF582Q96NG8 517 aaPredicted RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 IMP3Q9NV31 184 aaKnown RBP21.46■■□□□ 1.03
VPS53-211ENST00000571805 C14orf119Q9NWQ9 140 aa21.46■■□□□ 1.03
VPS53-211ENST00000571805 RORCP51449 518 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 GAS1P54826 345 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 PDGFRLQ15198 375 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 FLYWCH1Q4VC44 716 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 KIF18BQ86Y91 864 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 SFXN5Q8TD22 340 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 CHAC2Q8WUX2 184 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 ASB15Q8WXK1 588 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 FGF13Q92913 245 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 LRR1Q96L50 414 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 SLC6A20Q9NP91 592 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 SNTG1Q9NSN8 517 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 SERGEFQ9UGK8 458 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 FBXW2Q9UKT8 454 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 KCNE3Q9Y6H6 103 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 KIAA0100Q14667 2235 aaKnown RBP21.45■■□□□ 1.02
VPS53-211ENST00000571805 A0A0G2JPF8 293 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 HNRNPCL2B2RXH8 293 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 HNRNPCL3B7ZW38 293 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 HNRNPCL4P0DMR1 293 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 HIST1H1TP22492 207 aaPredicted RBP21.45■■□□□ 1.02
VPS53-211ENST00000571805 ETV5P41161 510 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 BUD31P41223 144 aaPredicted RBP21.45■■□□□ 1.02
VPS53-211ENST00000571805 ETV1P50549 477 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 LRIT3Q3SXY7 679 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 LIPKQ5VXJ0 399 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 ABHD17CQ6PCB6 329 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 ADGRD2Q7Z7M1 963 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 CCDC116Q8IYX3 515 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 ACOT4Q8N9L9 421 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 C16orf58Q96GQ5 468 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 CTPS2Q9NRF8 586 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 KCNK6Q9Y257 313 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 PLEKHM1Q9Y4G2 1056 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 C2orf16Q68DN1 1984 aa21.45■■□□□ 1.02
VPS53-211ENST00000571805 A0A1W2PS29 197 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 H3BQ06 376 aaPredicted RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 MYL12BO14950 172 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 ERI3O43414 337 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 PRICKLE3O43900 615 aaPredicted RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 SSX4O60224 188 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 RAB36O95755 333 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 PAK4O96013 591 aaPredicted RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 C1DQ13901 141 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 IL17RDQ8NFM7 739 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 PLA2G12AQ9BZM1 189 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 CES1P1Q9UKY3 287 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 TBC1D24Q9ULP9 559 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 V9GYH0 126 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 CASC3O15234 703 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 SNRNP200O75643 2136 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 ACADMP11310 421 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 ATP5A1P25705 553 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 CST6Q15828 149 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms